Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC13.74□□□□□ -0.21
Col28a1Q2UY11 Ndufa1-201ENSMUST00000016571 419 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col28a1Q2UY11 Ly6g6e-204ENSMUST00000172959 501 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col28a1Q2UY11 Rhox2a-202ENSMUST00000173650 735 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Col28a1Q2UY11 Dynlt1b-201ENSMUST00000179569 768 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col28a1Q2UY11 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC13.74□□□□□ -0.21
Col28a1Q2UY11 Rhox2c-204ENSMUST00000184688 720 ntTSL 5 BASIC13.74□□□□□ -0.21
Col28a1Q2UY11 Gm7787-201ENSMUST00000216858 688 ntBASIC13.74□□□□□ -0.21
Col28a1Q2UY11 Lce1b-201ENSMUST00000029531 647 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col28a1Q2UY11 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col28a1Q2UY11 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col28a1Q2UY11 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Col28a1Q2UY11 Nfasc-201ENSMUST00000043189 5072 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col28a1Q2UY11 Morn1-201ENSMUST00000030915 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col28a1Q2UY11 Tsn-201ENSMUST00000027623 7063 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col28a1Q2UY11 Chac1-201ENSMUST00000028780 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col28a1Q2UY11 Umad1-208ENSMUST00000162034 2015 ntAPPRIS ALT2 TSL 3 BASIC13.74□□□□□ -0.21
Col28a1Q2UY11 Hps1-208ENSMUST00000162004 2847 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col28a1Q2UY11 Gucy2e-202ENSMUST00000108664 4415 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
Col28a1Q2UY11 Prkcq-201ENSMUST00000028118 3583 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col28a1Q2UY11 Elmo3-202ENSMUST00000212033 2351 ntTSL 5 BASIC13.74□□□□□ -0.21
Col28a1Q2UY11 Eif4g1-205ENSMUST00000115461 5507 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
Col28a1Q2UY11 Nat8f6-202ENSMUST00000174143 1571 ntAPPRIS P1 TSL 3 BASIC13.74□□□□□ -0.21
Col28a1Q2UY11 Gm26688-201ENSMUST00000181176 1568 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Col28a1Q2UY11 Larp1b-205ENSMUST00000191805 1581 ntAPPRIS P2 TSL 5 BASIC13.74□□□□□ -0.21
Col28a1Q2UY11 Fhod3-201ENSMUST00000037097 5408 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col28a1Q2UY11 Spsb1-203ENSMUST00000105685 1537 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col28a1Q2UY11 Wnk1-203ENSMUST00000088644 11330 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
Col28a1Q2UY11 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col28a1Q2UY11 Znrf1-203ENSMUST00000168428 4451 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col28a1Q2UY11 Sept12-201ENSMUST00000170323 2576 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Col28a1Q2UY11 Usf1-208ENSMUST00000161241 2167 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col28a1Q2UY11 Tcf21-202ENSMUST00000218002 1788 ntBASIC13.73□□□□□ -0.21
Col28a1Q2UY11 Lin54-208ENSMUST00000149714 3869 ntTSL 5 BASIC13.73□□□□□ -0.21
Col28a1Q2UY11 Gpc5-201ENSMUST00000022707 1719 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col28a1Q2UY11 Vdac3-201ENSMUST00000009036 1354 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col28a1Q2UY11 Mob1a-202ENSMUST00000055261 4412 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col28a1Q2UY11 Grin3a-202ENSMUST00000093859 7491 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Col28a1Q2UY11 Rhoj-201ENSMUST00000055390 2350 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col28a1Q2UY11 Gpsm1-204ENSMUST00000114134 2043 ntTSL 3 BASIC13.73□□□□□ -0.21
Col28a1Q2UY11 Slc37a1-201ENSMUST00000165149 3354 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col28a1Q2UY11 Tspyl5-201ENSMUST00000042021 4010 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
Col28a1Q2UY11 Ralgapb-203ENSMUST00000109486 8383 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col28a1Q2UY11 Guca1b-201ENSMUST00000024774 1668 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col28a1Q2UY11 Ilvbl-201ENSMUST00000105384 2329 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col28a1Q2UY11 Fbxo28-201ENSMUST00000051431 4925 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col28a1Q2UY11 Rabep2-201ENSMUST00000106405 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col28a1Q2UY11 AC131743.5-201ENSMUST00000220775 1618 ntBASIC13.73□□□□□ -0.21
Col28a1Q2UY11 Slc25a37-201ENSMUST00000037064 4174 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col28a1Q2UY11 Taf7l-201ENSMUST00000009740 1933 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col28a1Q2UY11 Gucd1-201ENSMUST00000039796 3500 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col28a1Q2UY11 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC13.73□□□□□ -0.21
Col28a1Q2UY11 Arid2-202ENSMUST00000134985 809 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Col28a1Q2UY11 Fam241b-208ENSMUST00000142796 1135 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col28a1Q2UY11 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col28a1Q2UY11 Erp27-201ENSMUST00000032343 1029 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col28a1Q2UY11 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col28a1Q2UY11 Abtb2-201ENSMUST00000076212 4558 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col28a1Q2UY11 Zbtb5-202ENSMUST00000107817 3867 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col28a1Q2UY11 Cep85-201ENSMUST00000040271 3893 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col28a1Q2UY11 B3gnt8-201ENSMUST00000076034 1463 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col28a1Q2UY11 Cgn-201ENSMUST00000107272 4963 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col28a1Q2UY11 Slc39a2-201ENSMUST00000047726 2334 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col28a1Q2UY11 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col28a1Q2UY11 Srr-204ENSMUST00000121738 3183 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col28a1Q2UY11 5730409E04Rik-201ENSMUST00000097886 2886 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col28a1Q2UY11 Ankrd34a-201ENSMUST00000058943 2583 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col28a1Q2UY11 Papd7-201ENSMUST00000044081 3994 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Col28a1Q2UY11 AC121805.2-201ENSMUST00000218808 2538 ntBASIC13.72□□□□□ -0.21
Col28a1Q2UY11 Lrrc56-202ENSMUST00000070458 2502 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col28a1Q2UY11 Nhs-202ENSMUST00000087085 8805 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col28a1Q2UY11 Sptb-201ENSMUST00000021458 10394 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col28a1Q2UY11 Gm9252-201ENSMUST00000172364 1602 ntBASIC13.72□□□□□ -0.21
Col28a1Q2UY11 Lrfn2-201ENSMUST00000046254 3202 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col28a1Q2UY11 Grin2c-201ENSMUST00000003351 4279 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Col28a1Q2UY11 Dapk1-201ENSMUST00000044083 5304 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col28a1Q2UY11 Gm13003-201ENSMUST00000151040 2904 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Col28a1Q2UY11 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col28a1Q2UY11 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Col28a1Q2UY11 Diaph1-202ENSMUST00000080033 4378 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col28a1Q2UY11 Dhdds-203ENSMUST00000105886 1015 ntTSL 5 BASIC13.72□□□□□ -0.21
Col28a1Q2UY11 Acyp1-203ENSMUST00000117138 735 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
Col28a1Q2UY11 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC13.72□□□□□ -0.21
Col28a1Q2UY11 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC13.72□□□□□ -0.21
Col28a1Q2UY11 Gm34397-203ENSMUST00000214991 630 ntTSL 5 BASIC13.72□□□□□ -0.21
Col28a1Q2UY11 Gm18246-201ENSMUST00000221023 728 ntBASIC13.72□□□□□ -0.21
Col28a1Q2UY11 Mt3-201ENSMUST00000034211 536 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col28a1Q2UY11 Tspo-201ENSMUST00000047419 837 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col28a1Q2UY11 Pcdh10-201ENSMUST00000166126 7081 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Col28a1Q2UY11 Rbm33-201ENSMUST00000030920 3955 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Col28a1Q2UY11 Chd4-203ENSMUST00000112392 6652 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
Col28a1Q2UY11 Slc19a2-202ENSMUST00000159230 3432 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Col28a1Q2UY11 Zbtb33-201ENSMUST00000049740 5122 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col28a1Q2UY11 D230025D16Rik-201ENSMUST00000034361 2916 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col28a1Q2UY11 E230029C05Rik-202ENSMUST00000207458 2445 ntTSL 5 BASIC13.72□□□□□ -0.21
Col28a1Q2UY11 Csk-209ENSMUST00000217314 2162 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col28a1Q2UY11 Gata2-202ENSMUST00000170089 3135 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col28a1Q2UY11 Gm38346-201ENSMUST00000192379 2639 ntBASIC13.72□□□□□ -0.21
Col28a1Q2UY11 Arid1b-202ENSMUST00000115797 11325 ntAPPRIS P2 TSL 5 BASIC13.72□□□□□ -0.21
Col28a1Q2UY11 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 26.9 ms