Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col17a1Q07563 Ywhaq-ps2-201ENSMUST00000117738 643 ntBASIC21.26■□□□□ 0.99
Col17a1Q07563 Spata3-207ENSMUST00000135440 732 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Col17a1Q07563 Scgb1b19-201ENSMUST00000165813 418 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
Col17a1Q07563 Hsbp1l1-201ENSMUST00000166219 1251 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col17a1Q07563 Scgb1b3-201ENSMUST00000179481 419 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col17a1Q07563 Mir124-2hg-207ENSMUST00000189868 535 ntTSL 2 BASIC21.26■□□□□ 0.99
Col17a1Q07563 Gm42839-201ENSMUST00000198978 525 ntTSL 2 BASIC21.26■□□□□ 0.99
Col17a1Q07563 Gm44552-201ENSMUST00000205458 1247 ntBASIC21.26■□□□□ 0.99
Col17a1Q07563 Trex2-201ENSMUST00000033738 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col17a1Q07563 Spata3-201ENSMUST00000052854 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col17a1Q07563 Hsd3b4-202ENSMUST00000196861 1610 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col17a1Q07563 Gm10681-201ENSMUST00000058728 1610 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col17a1Q07563 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
Col17a1Q07563 9330020H09Rik-201ENSMUST00000163781 2147 ntTSL 2 BASIC21.25■□□□□ 0.99
Col17a1Q07563 Wscd1-203ENSMUST00000108511 2866 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
Col17a1Q07563 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Col17a1Q07563 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Col17a1Q07563 0610005C13Rik-207ENSMUST00000210866 2434 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Col17a1Q07563 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
Col17a1Q07563 Hs3st2-201ENSMUST00000084628 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Col17a1Q07563 Fank1-201ENSMUST00000065359 2004 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Col17a1Q07563 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Col17a1Q07563 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Col17a1Q07563 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
Col17a1Q07563 Birc7-201ENSMUST00000108875 1178 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
Col17a1Q07563 Gm12266-201ENSMUST00000120311 962 ntBASIC21.25■□□□□ 0.99
Col17a1Q07563 Gm15547-201ENSMUST00000122152 333 ntBASIC21.25■□□□□ 0.99
Col17a1Q07563 Mocs2-215ENSMUST00000184335 646 ntTSL 5 BASIC21.25■□□□□ 0.99
Col17a1Q07563 Gm31651-201ENSMUST00000198864 560 ntTSL 3 BASIC21.25■□□□□ 0.99
Col17a1Q07563 Gm43916-201ENSMUST00000205062 967 ntBASIC21.25■□□□□ 0.99
Col17a1Q07563 Gm45224-201ENSMUST00000208203 414 ntBASIC21.25■□□□□ 0.99
Col17a1Q07563 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Col17a1Q07563 Cym-201ENSMUST00000029504 1236 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Col17a1Q07563 Car5a-201ENSMUST00000057653 1249 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Col17a1Q07563 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Col17a1Q07563 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC21.25■□□□□ 0.99
Col17a1Q07563 Alas1-201ENSMUST00000074082 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Col17a1Q07563 Etv1-211ENSMUST00000162563 1865 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
Col17a1Q07563 1500015A07Rik-201ENSMUST00000184181 1865 ntBASIC21.24■□□□□ 0.99
Col17a1Q07563 Cyp4f37-201ENSMUST00000077639 2642 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Col17a1Q07563 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Col17a1Q07563 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC21.24■□□□□ 0.99
Col17a1Q07563 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Col17a1Q07563 Gm10714-201ENSMUST00000131346 874 ntTSL 2 BASIC21.24■□□□□ 0.99
Col17a1Q07563 Rnf2-203ENSMUST00000186415 1106 ntTSL 5 BASIC21.24■□□□□ 0.99
Col17a1Q07563 Olfr1368-201ENSMUST00000055298 1064 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
Col17a1Q07563 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Col17a1Q07563 Nf2-201ENSMUST00000053079 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Col17a1Q07563 Rab30-202ENSMUST00000107179 1304 ntTSL 5 BASIC21.24■□□□□ 0.99
Col17a1Q07563 Ppp2r2b-203ENSMUST00000120632 2081 ntAPPRIS ALT1 TSL 5 BASIC21.24■□□□□ 0.99
Col17a1Q07563 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Col17a1Q07563 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Col17a1Q07563 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC21.23■□□□□ 0.99
Col17a1Q07563 Mdp1-201ENSMUST00000002400 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Col17a1Q07563 Celrr-202ENSMUST00000181433 1561 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Col17a1Q07563 Nmbr-201ENSMUST00000020015 1599 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Col17a1Q07563 Krt17-201ENSMUST00000080893 1551 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Col17a1Q07563 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Col17a1Q07563 Skap1-206ENSMUST00000107663 742 ntTSL 3 BASIC21.23■□□□□ 0.99
Col17a1Q07563 Zar1l-201ENSMUST00000118769 895 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Col17a1Q07563 Nr2f1-203ENSMUST00000127137 991 ntTSL 5 BASIC21.23■□□□□ 0.99
Col17a1Q07563 Gm24749-201ENSMUST00000157838 343 ntBASIC21.23■□□□□ 0.99
Col17a1Q07563 Gm19287-201ENSMUST00000203190 358 ntBASIC21.23■□□□□ 0.99
Col17a1Q07563 Ccdc28a-202ENSMUST00000080860 1190 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Col17a1Q07563 Cd8b1-201ENSMUST00000065248 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Col17a1Q07563 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Col17a1Q07563 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Col17a1Q07563 Mettl3-201ENSMUST00000022767 2025 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Col17a1Q07563 Gm18630-201ENSMUST00000222109 1397 ntBASIC21.22■□□□□ 0.99
Col17a1Q07563 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC21.22■□□□□ 0.99
Col17a1Q07563 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col17a1Q07563 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col17a1Q07563 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col17a1Q07563 Wdr73-201ENSMUST00000026816 2114 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col17a1Q07563 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col17a1Q07563 Nppa-201ENSMUST00000103230 865 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col17a1Q07563 Trav13-1-201ENSMUST00000103651 331 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
Col17a1Q07563 E130114P18Rik-202ENSMUST00000107068 1132 ntAPPRIS P5 TSL 3 BASIC21.22■□□□□ 0.99
Col17a1Q07563 Gm4768-201ENSMUST00000206199 686 ntBASIC21.22■□□□□ 0.99
Col17a1Q07563 Ceacam1-209ENSMUST00000206687 1061 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Col17a1Q07563 Nudt7-201ENSMUST00000066514 935 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col17a1Q07563 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col17a1Q07563 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col17a1Q07563 Yaf2-201ENSMUST00000080299 1676 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col17a1Q07563 Exoc6-201ENSMUST00000066439 2729 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col17a1Q07563 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col17a1Q07563 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col17a1Q07563 Krt31-201ENSMUST00000007318 1581 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col17a1Q07563 Decr2-201ENSMUST00000040907 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col17a1Q07563 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
Col17a1Q07563 Zufsp-205ENSMUST00000218880 2005 ntTSL 5 BASIC21.22■□□□□ 0.99
Col17a1Q07563 Pias3-201ENSMUST00000064900 2931 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Col17a1Q07563 Gm19221-201ENSMUST00000221827 1477 ntBASIC21.21■□□□□ 0.99
Col17a1Q07563 Gm6370-201ENSMUST00000110611 1142 ntAPPRIS P2 TSL 5 BASIC21.21■□□□□ 0.99
Col17a1Q07563 Zfp36l1-ps-201ENSMUST00000118349 899 ntBASIC21.21■□□□□ 0.99
Col17a1Q07563 Gm6309-201ENSMUST00000174320 1154 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
Col17a1Q07563 Ighv5-7-201ENSMUST00000192302 244 ntBASIC21.21■□□□□ 0.99
Col17a1Q07563 Gm19430-201ENSMUST00000193847 2137 ntBASIC21.21■□□□□ 0.99
Col17a1Q07563 AC159376.1-201ENSMUST00000218504 630 ntBASIC21.21■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 42.2 ms