Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Camta1-211ENSMUST00000169423 5208 ntAPPRIS P2 TSL 5 BASIC12.2□□□□□ -0.46
Nkx3-1P97436 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Nkx3-1P97436 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Nkx3-1P97436 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Nkx3-1P97436 Gjb4-202ENSMUST00000106090 1446 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Nkx3-1P97436 Gjb4-201ENSMUST00000060419 1445 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Nkx3-1P97436 Fasn-201ENSMUST00000055655 10050 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Nkx3-1P97436 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Nkx3-1P97436 Gm13589-201ENSMUST00000146404 1675 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Nkx3-1P97436 Cyp20a1-201ENSMUST00000060608 2223 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Nkx3-1P97436 Scara3-201ENSMUST00000042046 3597 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Nkx3-1P97436 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Nkx3-1P97436 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Nkx3-1P97436 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Nkx3-1P97436 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC12.19□□□□□ -0.46
Nkx3-1P97436 Gm8131-201ENSMUST00000213783 1570 ntBASIC12.19□□□□□ -0.46
Nkx3-1P97436 Gprc5c-208ENSMUST00000177952 1809 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Nkx3-1P97436 Fkbp10-201ENSMUST00000001595 2584 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Nkx3-1P97436 Fstl5-201ENSMUST00000038364 5107 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Nkx3-1P97436 1700016P03Rik-201ENSMUST00000134252 863 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Nkx3-1P97436 Cpne8-201ENSMUST00000014777 697 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Nkx3-1P97436 Ube2f-210ENSMUST00000191368 1110 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Nkx3-1P97436 Tcta-203ENSMUST00000195615 597 ntTSL 5 BASIC12.19□□□□□ -0.46
Nkx3-1P97436 Gm5279-201ENSMUST00000199575 745 ntBASIC12.19□□□□□ -0.46
Nkx3-1P97436 Zfp936-202ENSMUST00000200973 578 ntTSL 3 BASIC12.19□□□□□ -0.46
Nkx3-1P97436 Gm18062-201ENSMUST00000208020 547 ntBASIC12.19□□□□□ -0.46
Nkx3-1P97436 Gm18055-201ENSMUST00000208254 547 ntBASIC12.19□□□□□ -0.46
Nkx3-1P97436 Efcab10-201ENSMUST00000020878 673 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Nkx3-1P97436 Gm17795-201ENSMUST00000214505 757 ntBASIC12.19□□□□□ -0.46
Nkx3-1P97436 Cybrd1-201ENSMUST00000028403 5339 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Nkx3-1P97436 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Nkx3-1P97436 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Nkx3-1P97436 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Nkx3-1P97436 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Nkx3-1P97436 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC12.19□□□□□ -0.46
Nkx3-1P97436 Zyg11b-201ENSMUST00000043616 8691 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Nkx3-1P97436 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Nkx3-1P97436 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Nkx3-1P97436 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Nkx3-1P97436 Tcf3-208ENSMUST00000105344 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Nkx3-1P97436 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Nkx3-1P97436 Dctn1-201ENSMUST00000077407 4118 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Nkx3-1P97436 Gm42632-201ENSMUST00000201707 2411 ntBASIC12.19□□□□□ -0.46
Nkx3-1P97436 Prickle1-201ENSMUST00000048982 4085 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Nkx3-1P97436 Mark2-209ENSMUST00000165965 2874 ntAPPRIS P4 TSL 1 (best) BASIC12.19□□□□□ -0.46
Nkx3-1P97436 Papd7-204ENSMUST00000223344 2118 ntAPPRIS P2 TSL 3 BASIC12.19□□□□□ -0.46
Nkx3-1P97436 Cand1-201ENSMUST00000020315 7766 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Nkx3-1P97436 Shpk-201ENSMUST00000006105 2808 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Nkx3-1P97436 Gm5934-201ENSMUST00000120734 2588 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Nkx3-1P97436 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
Nkx3-1P97436 Mctp1-204ENSMUST00000125209 4715 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Nkx3-1P97436 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Nkx3-1P97436 Lamb2-201ENSMUST00000065014 5629 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Nkx3-1P97436 Acadm-201ENSMUST00000072697 2047 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Nkx3-1P97436 Zhx3-203ENSMUST00000109460 4480 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Nkx3-1P97436 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Nkx3-1P97436 Etv6-202ENSMUST00000111963 5707 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Nkx3-1P97436 Slc4a2-201ENSMUST00000080067 4179 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Nkx3-1P97436 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Nkx3-1P97436 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Nkx3-1P97436 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC12.18□□□□□ -0.46
Nkx3-1P97436 Golt1b-201ENSMUST00000032372 2818 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Nkx3-1P97436 Creg2-201ENSMUST00000053355 6091 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Nkx3-1P97436 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Nkx3-1P97436 Plekhb1-206ENSMUST00000107047 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Nkx3-1P97436 Slc39a11-201ENSMUST00000042657 2781 ntAPPRIS ALT2 TSL 2 BASIC12.18□□□□□ -0.46
Nkx3-1P97436 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Nkx3-1P97436 Defb30-203ENSMUST00000111208 503 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Nkx3-1P97436 Defb30-204ENSMUST00000111209 721 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Nkx3-1P97436 Rpsa-ps9-201ENSMUST00000120702 885 ntBASIC12.18□□□□□ -0.46
Nkx3-1P97436 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Nkx3-1P97436 H60b-202ENSMUST00000131558 1080 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
Nkx3-1P97436 Hoxa7-203ENSMUST00000140316 643 ntTSL 3 BASIC12.18□□□□□ -0.46
Nkx3-1P97436 Ube2i-211ENSMUST00000173713 890 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Nkx3-1P97436 Stk19-ps1-201ENSMUST00000174597 517 ntBASIC12.18□□□□□ -0.46
Nkx3-1P97436 Tac2-202ENSMUST00000179960 852 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Nkx3-1P97436 Gm27701-201ENSMUST00000184498 110 ntBASIC12.18□□□□□ -0.46
Nkx3-1P97436 Gm28911-201ENSMUST00000188837 117 ntBASIC12.18□□□□□ -0.46
Nkx3-1P97436 Gm28198-201ENSMUST00000190938 471 ntTSL 3 BASIC12.18□□□□□ -0.46
Nkx3-1P97436 CT030161.3-201ENSMUST00000218235 367 ntTSL 3 BASIC12.18□□□□□ -0.46
Nkx3-1P97436 AC162801.1-201ENSMUST00000220612 198 ntBASIC12.18□□□□□ -0.46
Nkx3-1P97436 Gm36756-203ENSMUST00000223029 1166 ntTSL 5 BASIC12.18□□□□□ -0.46
Nkx3-1P97436 Prss41-201ENSMUST00000024926 1128 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Nkx3-1P97436 Tac2-201ENSMUST00000026466 678 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Nkx3-1P97436 Oxt-201ENSMUST00000028764 537 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Nkx3-1P97436 Ndufa4l2-201ENSMUST00000035735 934 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Nkx3-1P97436 Tpd52-201ENSMUST00000063496 697 ntTSL 2 BASIC12.18□□□□□ -0.46
Nkx3-1P97436 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
Nkx3-1P97436 Ntf3-201ENSMUST00000050484 1483 ntAPPRIS P3 TSL 2 BASIC12.18□□□□□ -0.46
Nkx3-1P97436 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Nkx3-1P97436 Arid1b-202ENSMUST00000115797 11325 ntAPPRIS P2 TSL 5 BASIC12.18□□□□□ -0.46
Nkx3-1P97436 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
Nkx3-1P97436 Gm29340-201ENSMUST00000188763 3854 ntBASIC12.18□□□□□ -0.46
Nkx3-1P97436 Dmrtc1c1-201ENSMUST00000118218 1611 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Nkx3-1P97436 Dmrtc1c2-203ENSMUST00000120314 1611 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
Nkx3-1P97436 Celf1-214ENSMUST00000177642 7806 ntAPPRIS ALT1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Nkx3-1P97436 Tomm70a-201ENSMUST00000166897 3778 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Nkx3-1P97436 Trib1-201ENSMUST00000067543 4330 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Nkx3-1P97436 Aspm-205ENSMUST00000200083 6072 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Nkx3-1P97436 Ttyh1-203ENSMUST00000119661 2512 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 8.6 ms