Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Eaf2-201ENSMUST00000023537 849 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
Cux1P53564 Trpt1-201ENSMUST00000088223 1142 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Cux1P53564 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC21.4■■□□□ 1.02
Cux1P53564 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
Cux1P53564 Gm17705-201ENSMUST00000172285 1555 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Cux1P53564 Allc-202ENSMUST00000110917 1384 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Cux1P53564 A230077H06Rik-201ENSMUST00000188579 2918 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Cux1P53564 Smarcb1-201ENSMUST00000000925 1660 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
Cux1P53564 Brsk2-204ENSMUST00000105989 2149 ntAPPRIS P4 TSL 5 BASIC21.39■■□□□ 1.02
Cux1P53564 Gm7584-201ENSMUST00000175829 940 ntBASIC21.39■■□□□ 1.02
Cux1P53564 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC21.39■■□□□ 1.02
Cux1P53564 Gm38241-201ENSMUST00000192641 898 ntBASIC21.39■■□□□ 1.02
Cux1P53564 Gm45880-201ENSMUST00000213041 853 ntBASIC21.39■■□□□ 1.02
Cux1P53564 Cenpm-202ENSMUST00000089157 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Cux1P53564 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.02
Cux1P53564 Lurap1l-201ENSMUST00000055922 3066 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Cux1P53564 Dlk1-204ENSMUST00000109843 1300 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
Cux1P53564 Gypc-202ENSMUST00000174000 2072 ntAPPRIS ALT2 TSL 3 BASIC21.39■■□□□ 1.01
Cux1P53564 Mbp-203ENSMUST00000075372 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
Cux1P53564 Trf-201ENSMUST00000035158 2571 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Cux1P53564 Cep57-201ENSMUST00000034398 2523 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
Cux1P53564 Ppih-203ENSMUST00000106318 800 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Cux1P53564 Cox16-202ENSMUST00000110340 668 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Cux1P53564 Rhox2f-201ENSMUST00000115173 799 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
Cux1P53564 Rpl3-ps2-201ENSMUST00000117131 1214 ntBASIC21.39■■□□□ 1.01
Cux1P53564 Gm11400-201ENSMUST00000120853 1214 ntBASIC21.39■■□□□ 1.01
Cux1P53564 E130006D01Rik-203ENSMUST00000137398 906 ntTSL 2 BASIC21.39■■□□□ 1.01
Cux1P53564 Gm8801-201ENSMUST00000173255 1064 ntBASIC21.39■■□□□ 1.01
Cux1P53564 Rab11b-ps2-201ENSMUST00000178377 657 ntBASIC21.39■■□□□ 1.01
Cux1P53564 Gm27516-201ENSMUST00000184237 98 ntBASIC21.39■■□□□ 1.01
Cux1P53564 Gm5850-201ENSMUST00000192923 1206 ntBASIC21.39■■□□□ 1.01
Cux1P53564 Gm4610-201ENSMUST00000198222 905 ntTSL 5 BASIC21.39■■□□□ 1.01
Cux1P53564 Hax1-207ENSMUST00000198782 855 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.01
Cux1P53564 Snhg8-203ENSMUST00000199645 528 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Cux1P53564 Gm44064-201ENSMUST00000204964 1087 ntBASIC21.39■■□□□ 1.01
Cux1P53564 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Cux1P53564 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
Cux1P53564 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
Cux1P53564 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Cux1P53564 Morn1-201ENSMUST00000030915 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Cux1P53564 Gm15544-201ENSMUST00000118776 1531 ntBASIC21.38■■□□□ 1.01
Cux1P53564 1110008P14Rik-202ENSMUST00000146423 2618 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Cux1P53564 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Cux1P53564 Gm37305-201ENSMUST00000195714 4279 ntBASIC21.38■■□□□ 1.01
Cux1P53564 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
Cux1P53564 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Cux1P53564 Pkig-203ENSMUST00000109400 1059 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Cux1P53564 Gm14350-201ENSMUST00000116642 640 ntBASIC21.38■■□□□ 1.01
Cux1P53564 Gm11658-201ENSMUST00000120913 1008 ntBASIC21.38■■□□□ 1.01
Cux1P53564 Gm2467-201ENSMUST00000182266 1010 ntBASIC21.38■■□□□ 1.01
Cux1P53564 Gm6981-201ENSMUST00000182467 1008 ntBASIC21.38■■□□□ 1.01
Cux1P53564 Capg-201ENSMUST00000071044 1247 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Cux1P53564 Tex19.2-201ENSMUST00000039146 2046 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Cux1P53564 Rpl5-201ENSMUST00000082223 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Cux1P53564 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC21.38■■□□□ 1.01
Cux1P53564 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Cux1P53564 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Cux1P53564 Mapk7-201ENSMUST00000079080 3019 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Cux1P53564 Gm8337-201ENSMUST00000187358 1938 ntBASIC21.38■■□□□ 1.01
Cux1P53564 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC21.37■■□□□ 1.01
Cux1P53564 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Cux1P53564 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Cux1P53564 Tmem254b-202ENSMUST00000100806 1108 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Cux1P53564 Tmem254a-201ENSMUST00000100811 1108 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Cux1P53564 Psme2b-201ENSMUST00000104958 837 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
Cux1P53564 Gm37922-201ENSMUST00000195596 455 ntBASIC21.37■■□□□ 1.01
Cux1P53564 Gm37497-201ENSMUST00000195830 798 ntBASIC21.37■■□□□ 1.01
Cux1P53564 Gm39318-201ENSMUST00000214606 1118 ntTSL 3 BASIC21.37■■□□□ 1.01
Cux1P53564 Tyms-ps-201ENSMUST00000219550 915 ntBASIC21.37■■□□□ 1.01
Cux1P53564 Ccl24-201ENSMUST00000004936 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Cux1P53564 Gm17383-201ENSMUST00000078739 1041 ntBASIC21.37■■□□□ 1.01
Cux1P53564 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Cux1P53564 Gm4793-201ENSMUST00000067468 2616 ntTSL 2 BASIC21.37■■□□□ 1.01
Cux1P53564 Tmem86b-202ENSMUST00000205360 1344 ntTSL 2 BASIC21.37■■□□□ 1.01
Cux1P53564 Rhbdd3-203ENSMUST00000109878 1611 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Cux1P53564 Mmp21-201ENSMUST00000033278 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Cux1P53564 Tmem38b-201ENSMUST00000030127 2862 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Cux1P53564 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Cux1P53564 Pcgf2-201ENSMUST00000018681 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Cux1P53564 Gm11618-201ENSMUST00000117946 267 ntBASIC21.36■■□□□ 1.01
Cux1P53564 Dgcr6-203ENSMUST00000143343 1280 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Cux1P53564 Synj2bp-205ENSMUST00000169158 691 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Cux1P53564 Gm27501-201ENSMUST00000183599 107 ntBASIC21.36■■□□□ 1.01
Cux1P53564 2310040G24Rik-202ENSMUST00000189386 775 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Cux1P53564 Utp23-201ENSMUST00000059599 740 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Cux1P53564 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Cux1P53564 Armcx1-204ENSMUST00000113198 2085 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
Cux1P53564 Slc31a2-201ENSMUST00000084530 1820 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
Cux1P53564 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Cux1P53564 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Cux1P53564 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Cux1P53564 Nab1-204ENSMUST00000170269 1371 ntTSL 5 BASIC21.36■■□□□ 1.01
Cux1P53564 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Cux1P53564 Osbpl9-202ENSMUST00000084366 3134 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Cux1P53564 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Cux1P53564 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Cux1P53564 Rpl38-204ENSMUST00000106602 371 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Cux1P53564 0610037L13Rik-205ENSMUST00000119394 741 ntTSL 3 BASIC21.35■■□□□ 1.01
Cux1P53564 Gm13350-201ENSMUST00000120519 479 ntBASIC21.35■■□□□ 1.01
Cux1P53564 Ccdc103-202ENSMUST00000159834 1156 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Retrieved 100 of 76,532 protein–RNA pairs in 37.2 ms