Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Gm15889-202ENSMUST00000212669 2443 ntBASIC16.9■□□□□ 0.3
Rfx1P48377 Ncam2-201ENSMUST00000037785 4893 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
Rfx1P48377 Gm11405-201ENSMUST00000118689 1556 ntBASIC16.9■□□□□ 0.3
Rfx1P48377 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Rfx1P48377 Acat2-201ENSMUST00000007005 2250 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Rfx1P48377 Dnaaf1-201ENSMUST00000093100 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Rfx1P48377 Plk4-203ENSMUST00000203295 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Rfx1P48377 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Rfx1P48377 Osbp2-202ENSMUST00000101632 2697 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
Rfx1P48377 Kcnd3-203ENSMUST00000118360 2668 ntAPPRIS P4 TSL 5 BASIC16.9■□□□□ 0.3
Rfx1P48377 Rps19-201ENSMUST00000108428 1284 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Rfx1P48377 Pih1d1-206ENSMUST00000210139 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Rfx1P48377 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC16.9■□□□□ 0.3
Rfx1P48377 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC16.9■□□□□ 0.3
Rfx1P48377 Kif9-204ENSMUST00000198043 2233 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Rfx1P48377 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Rfx1P48377 Ggt7-201ENSMUST00000029131 2614 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Rfx1P48377 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Rfx1P48377 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Rfx1P48377 Axdnd1-204ENSMUST00000178036 3586 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
Rfx1P48377 Kcnq2-208ENSMUST00000103051 4200 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
Rfx1P48377 Ilvbl-203ENSMUST00000218215 2331 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Rfx1P48377 Mcm9-206ENSMUST00000220007 3513 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Rfx1P48377 Egfl7-202ENSMUST00000102907 1372 ntAPPRIS P4 TSL 1 (best) BASIC16.89■□□□□ 0.3
Rfx1P48377 Pbx2-203ENSMUST00000173328 1990 ntTSL 2 BASIC16.89■□□□□ 0.3
Rfx1P48377 AW822073-202ENSMUST00000204003 1959 ntAPPRIS P1 BASIC16.89■□□□□ 0.3
Rfx1P48377 Dnaaf2-201ENSMUST00000021356 3390 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
Rfx1P48377 Mafk-201ENSMUST00000018287 2849 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Rfx1P48377 Gm13233-201ENSMUST00000118760 1443 ntBASIC16.89■□□□□ 0.29
Rfx1P48377 Gm13244-201ENSMUST00000118855 1446 ntBASIC16.89■□□□□ 0.29
Rfx1P48377 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Rfx1P48377 Grm5-204ENSMUST00000155358 4500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Rfx1P48377 Arhgap26-201ENSMUST00000097593 7898 ntAPPRIS P2 TSL 5 BASIC16.89■□□□□ 0.29
Rfx1P48377 Trim45-203ENSMUST00000106980 3337 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
Rfx1P48377 Chit1-201ENSMUST00000086475 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Rfx1P48377 Osbpl8-202ENSMUST00000105275 7204 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Rfx1P48377 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Rfx1P48377 Gm5479-201ENSMUST00000160578 435 ntBASIC16.89■□□□□ 0.29
Rfx1P48377 Gm5864-201ENSMUST00000202263 970 ntBASIC16.89■□□□□ 0.29
Rfx1P48377 AC115735.4-201ENSMUST00000227460 1944 ntBASIC16.89■□□□□ 0.29
Rfx1P48377 Zfp276-201ENSMUST00000001092 4071 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Rfx1P48377 Psph-201ENSMUST00000031399 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Rfx1P48377 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Rfx1P48377 Nudt18-201ENSMUST00000089049 3926 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Rfx1P48377 Gm29530-201ENSMUST00000187556 1956 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Rfx1P48377 B3gnt3-201ENSMUST00000034260 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Rfx1P48377 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Rfx1P48377 Gm12020-201ENSMUST00000119030 2042 ntBASIC16.89■□□□□ 0.29
Rfx1P48377 Tsc2-221ENSMUST00000228412 5432 ntAPPRIS ALT2 BASIC16.89■□□□□ 0.29
Rfx1P48377 Llgl2-212ENSMUST00000177736 3612 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
Rfx1P48377 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC16.89■□□□□ 0.29
Rfx1P48377 Rnf167-201ENSMUST00000037534 1833 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Rfx1P48377 Irak2-202ENSMUST00000089022 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Rfx1P48377 D930019O06Rik-201ENSMUST00000181841 3663 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Rfx1P48377 Pi4kb-201ENSMUST00000072287 3692 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Rfx1P48377 Slc52a3-204ENSMUST00000109861 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Rfx1P48377 Slc7a7-209ENSMUST00000226753 2126 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
Rfx1P48377 Wdr70-201ENSMUST00000045766 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Rfx1P48377 Mdm2-201ENSMUST00000020408 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Rfx1P48377 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC16.88■□□□□ 0.29
Rfx1P48377 Cacna2d1-205ENSMUST00000167946 7436 ntAPPRIS ALT1 TSL 5 BASIC16.88■□□□□ 0.29
Rfx1P48377 Atg16l1-203ENSMUST00000113190 3102 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Rfx1P48377 Smg5-201ENSMUST00000001451 4448 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Rfx1P48377 Id2-202ENSMUST00000221761 1969 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
Rfx1P48377 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Rfx1P48377 Mtmr7-202ENSMUST00000048898 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Rfx1P48377 Zfp146-201ENSMUST00000062181 2029 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Rfx1P48377 Tbc1d10c-201ENSMUST00000045864 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Rfx1P48377 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Rfx1P48377 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
Rfx1P48377 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Rfx1P48377 Gm9385-201ENSMUST00000117563 472 ntBASIC16.88■□□□□ 0.29
Rfx1P48377 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC16.88■□□□□ 0.29
Rfx1P48377 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC16.88■□□□□ 0.29
Rfx1P48377 Gm15483-201ENSMUST00000120338 456 ntBASIC16.88■□□□□ 0.29
Rfx1P48377 Avpi1-201ENSMUST00000018965 1044 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Rfx1P48377 Wdyhv1-204ENSMUST00000226955 1094 ntBASIC16.88■□□□□ 0.29
Rfx1P48377 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC16.88■□□□□ 0.29
Rfx1P48377 4930431F12Rik-201ENSMUST00000079389 429 ntTSL 5 BASIC16.88■□□□□ 0.29
Rfx1P48377 Gm11873-201ENSMUST00000117877 1304 ntBASIC16.88■□□□□ 0.29
Rfx1P48377 Ces1h-201ENSMUST00000145041 1870 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
Rfx1P48377 Gm14168-201ENSMUST00000144818 2197 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Rfx1P48377 Dnmt3b-209ENSMUST00000109773 4148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Rfx1P48377 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Rfx1P48377 Lgals8-202ENSMUST00000099821 2792 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Rfx1P48377 Col1a2-201ENSMUST00000031668 5348 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Rfx1P48377 Htatip2-201ENSMUST00000085272 1418 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
Rfx1P48377 Lsm14b-202ENSMUST00000058764 2566 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Rfx1P48377 Ube3b-201ENSMUST00000074002 5194 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Rfx1P48377 Rreb1-202ENSMUST00000110237 4617 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Rfx1P48377 Tnip2-201ENSMUST00000030991 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Rfx1P48377 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
Rfx1P48377 Stau2-215ENSMUST00000162435 2735 ntTSL 5 BASIC16.87■□□□□ 0.29
Rfx1P48377 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Rfx1P48377 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
Rfx1P48377 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Rfx1P48377 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Rfx1P48377 Engase-202ENSMUST00000135383 4064 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Rfx1P48377 Vps35-201ENSMUST00000034131 3474 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Rfx1P48377 Ankrd6-204ENSMUST00000084750 4444 ntAPPRIS P2 TSL 5 BASIC16.87■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 42.1 ms