Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 AC167669.2-201ENSMUST00000224417 1620 ntBASIC18.35■□□□□ 0.53
Col18a1P39061 Gm26576-201ENSMUST00000181018 1977 ntTSL 5 BASIC18.34■□□□□ 0.53
Col18a1P39061 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Col18a1P39061 Pcgf2-201ENSMUST00000018681 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col18a1P39061 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC18.34■□□□□ 0.53
Col18a1P39061 Gm5846-201ENSMUST00000193146 1414 ntBASIC18.34■□□□□ 0.53
Col18a1P39061 Rasgef1b-209ENSMUST00000168092 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col18a1P39061 Rasgef1b-201ENSMUST00000031276 2990 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col18a1P39061 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col18a1P39061 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Col18a1P39061 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col18a1P39061 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Col18a1P39061 Cyb5d1-202ENSMUST00000108660 1034 ntTSL 5 BASIC18.34■□□□□ 0.53
Col18a1P39061 Tpm1-210ENSMUST00000113693 1054 ntTSL 5 BASIC18.34■□□□□ 0.53
Col18a1P39061 n-R5s14-201ENSMUST00000122688 107 ntBASIC18.34■□□□□ 0.53
Col18a1P39061 Saa2-202ENSMUST00000210272 511 ntTSL 3 BASIC18.34■□□□□ 0.53
Col18a1P39061 Zfp36l1-203ENSMUST00000218835 292 ntTSL 3 BASIC18.34■□□□□ 0.53
Col18a1P39061 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col18a1P39061 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Col18a1P39061 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Col18a1P39061 A930004D18Rik-201ENSMUST00000066163 3217 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Col18a1P39061 Map2k7-203ENSMUST00000110994 1600 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Col18a1P39061 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Col18a1P39061 Btd-201ENSMUST00000090147 2324 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Col18a1P39061 Gm26185-201ENSMUST00000157692 266 ntBASIC18.33■□□□□ 0.53
Col18a1P39061 Gm27023-201ENSMUST00000182372 285 ntBASIC18.33■□□□□ 0.53
Col18a1P39061 Mb-201ENSMUST00000019037 966 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
Col18a1P39061 Gm18916-201ENSMUST00000198264 1246 ntBASIC18.33■□□□□ 0.53
Col18a1P39061 Spata24-201ENSMUST00000025209 701 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Col18a1P39061 Spata24-202ENSMUST00000096573 709 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Col18a1P39061 Gm8337-201ENSMUST00000187358 1938 ntBASIC18.33■□□□□ 0.53
Col18a1P39061 Gm44089-201ENSMUST00000203624 1930 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Col18a1P39061 Prdx2-203ENSMUST00000109734 1612 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
Col18a1P39061 Klf15-203ENSMUST00000203039 2482 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
Col18a1P39061 Exosc2-201ENSMUST00000038474 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Col18a1P39061 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Col18a1P39061 Gm11628-201ENSMUST00000117568 171 ntBASIC18.32■□□□□ 0.52
Col18a1P39061 Map2k3os-201ENSMUST00000123544 1291 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Col18a1P39061 Gm8738-201ENSMUST00000172606 329 ntBASIC18.32■□□□□ 0.52
Col18a1P39061 3300002P13Rik-201ENSMUST00000204020 1092 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Col18a1P39061 Pcgf5-203ENSMUST00000224679 1269 ntAPPRIS P5 BASIC18.32■□□□□ 0.52
Col18a1P39061 Fetub-203ENSMUST00000167399 1421 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col18a1P39061 Cant1-203ENSMUST00000106287 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col18a1P39061 Slc22a13b-ps-201ENSMUST00000173185 1458 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col18a1P39061 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Col18a1P39061 Fsd1-201ENSMUST00000011733 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col18a1P39061 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC18.32■□□□□ 0.52
Col18a1P39061 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col18a1P39061 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col18a1P39061 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Col18a1P39061 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Col18a1P39061 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Col18a1P39061 Tax1bp3-202ENSMUST00000108477 1153 ntTSL 5 BASIC18.32■□□□□ 0.52
Col18a1P39061 Slc52a3-202ENSMUST00000109858 2094 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Col18a1P39061 Gm11985-201ENSMUST00000122910 1007 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Col18a1P39061 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Col18a1P39061 Gm43303-201ENSMUST00000200133 669 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Col18a1P39061 Wdr45-223ENSMUST00000207675 1335 ntTSL 5 BASIC18.32■□□□□ 0.52
Col18a1P39061 Gm5884-201ENSMUST00000036712 1479 ntBASIC18.32■□□□□ 0.52
Col18a1P39061 Pitpnb-201ENSMUST00000086635 2761 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
Col18a1P39061 Atrip-201ENSMUST00000045011 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col18a1P39061 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col18a1P39061 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col18a1P39061 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col18a1P39061 Rgs17-203ENSMUST00000117676 1651 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col18a1P39061 6430550D23Rik-201ENSMUST00000086145 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col18a1P39061 Batf2-201ENSMUST00000045042 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col18a1P39061 Yipf1-201ENSMUST00000075693 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col18a1P39061 Ggnbp1-202ENSMUST00000122106 1107 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Col18a1P39061 Gm20470-201ENSMUST00000174654 331 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Col18a1P39061 Ccser2-208ENSMUST00000183007 1293 ntTSL 5 BASIC18.31■□□□□ 0.52
Col18a1P39061 Gm45770-201ENSMUST00000212105 616 ntBASIC18.31■□□□□ 0.52
Col18a1P39061 Abhd14b-210ENSMUST00000217496 631 ntTSL 5 BASIC18.31■□□□□ 0.52
Col18a1P39061 Prss43-201ENSMUST00000077549 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col18a1P39061 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Col18a1P39061 Tcf4-248ENSMUST00000202354 2120 ntTSL 5 BASIC18.31■□□□□ 0.52
Col18a1P39061 Tcf4-257ENSMUST00000202772 2125 ntTSL 5 BASIC18.31■□□□□ 0.52
Col18a1P39061 Ccdc185-201ENSMUST00000060041 2055 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Col18a1P39061 Gm13016-201ENSMUST00000126252 1720 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Col18a1P39061 Elovl3-201ENSMUST00000043739 1494 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col18a1P39061 Acot7-202ENSMUST00000075363 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col18a1P39061 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Col18a1P39061 Tnni1-205ENSMUST00000148201 1150 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Col18a1P39061 Tnni1-206ENSMUST00000152075 1038 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Col18a1P39061 Tnni1-207ENSMUST00000152208 1105 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Col18a1P39061 Fhit-206ENSMUST00000162278 981 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col18a1P39061 7530416G11Rik-201ENSMUST00000178942 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col18a1P39061 AC131330.1-201ENSMUST00000227814 1015 ntBASIC18.3■□□□□ 0.52
Col18a1P39061 Ccdc70-202ENSMUST00000070649 961 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col18a1P39061 Mill2-201ENSMUST00000072386 1121 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col18a1P39061 9930104L06Rik-201ENSMUST00000094769 2911 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Col18a1P39061 Slc30a2-201ENSMUST00000081094 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col18a1P39061 Cyth2-208ENSMUST00000211783 1983 ntTSL 5 BASIC18.3■□□□□ 0.52
Col18a1P39061 AC096628.2-201ENSMUST00000225443 1413 ntBASIC18.3■□□□□ 0.52
Col18a1P39061 Hsd17b6-201ENSMUST00000026462 1392 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Col18a1P39061 Gm11531-201ENSMUST00000117614 555 ntBASIC18.3■□□□□ 0.52
Col18a1P39061 Rbm3-ps-201ENSMUST00000121422 465 ntBASIC18.3■□□□□ 0.52
Col18a1P39061 Egfl7-209ENSMUST00000150404 892 ntAPPRIS P4 TSL 5 BASIC18.3■□□□□ 0.52
Col18a1P39061 Tepp-204ENSMUST00000161029 968 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col18a1P39061 Gm28450-201ENSMUST00000187349 638 ntBASIC18.3■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 40.2 ms