Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Slc9a3r2-202ENSMUST00000019684 1688 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
RaraP11416 Fgd4-211ENSMUST00000162671 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RaraP11416 Grb2-203ENSMUST00000106497 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RaraP11416 Phactr3-203ENSMUST00000108915 2694 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
RaraP11416 Phactr3-204ENSMUST00000108916 2656 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
RaraP11416 Sema3b-205ENSMUST00000102532 3191 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RaraP11416 Slc39a14-201ENSMUST00000022688 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
RaraP11416 Duxf3-202ENSMUST00000176875 2025 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
RaraP11416 Mfsd4b4-202ENSMUST00000178563 3523 ntTSL 5 BASIC15.27■□□□□ 0.04
RaraP11416 Gm2155-201ENSMUST00000181581 1974 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
RaraP11416 Diaph1-202ENSMUST00000080033 4378 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
RaraP11416 Zfp334-201ENSMUST00000103084 8205 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
RaraP11416 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
RaraP11416 Nek8-201ENSMUST00000017549 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
RaraP11416 Taf6-201ENSMUST00000048698 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
RaraP11416 Cadps2-213ENSMUST00000166458 4598 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
RaraP11416 Ccdc121-201ENSMUST00000058825 1819 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
RaraP11416 Gm45779-201ENSMUST00000212189 4064 ntBASIC15.27■□□□□ 0.04
RaraP11416 Dnajc8-205ENSMUST00000105939 746 ntTSL 5 BASIC15.27■□□□□ 0.04
RaraP11416 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
RaraP11416 H2af-ps-201ENSMUST00000119066 295 ntBASIC15.27■□□□□ 0.04
RaraP11416 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC15.27■□□□□ 0.04
RaraP11416 Gm21984-201ENSMUST00000123117 822 ntTSL 5 BASIC15.27■□□□□ 0.04
RaraP11416 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
RaraP11416 Sardhos-201ENSMUST00000170435 265 ntTSL 3 BASIC15.27■□□□□ 0.04
RaraP11416 Ssty1-201ENSMUST00000180056 699 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
RaraP11416 Gm29310-201ENSMUST00000185468 696 ntBASIC15.27■□□□□ 0.04
RaraP11416 Gm21825-201ENSMUST00000185728 696 ntBASIC15.27■□□□□ 0.04
RaraP11416 Gm29109-201ENSMUST00000185895 696 ntBASIC15.27■□□□□ 0.04
RaraP11416 Gm21896-201ENSMUST00000186520 696 ntBASIC15.27■□□□□ 0.04
RaraP11416 Gm21873-201ENSMUST00000186728 696 ntBASIC15.27■□□□□ 0.04
RaraP11416 Gm21794-201ENSMUST00000187056 696 ntBASIC15.27■□□□□ 0.04
RaraP11416 Gm21880-201ENSMUST00000187275 696 ntBASIC15.27■□□□□ 0.04
RaraP11416 Gm21826-201ENSMUST00000187451 696 ntBASIC15.27■□□□□ 0.04
RaraP11416 Gm21198-201ENSMUST00000188393 696 ntBASIC15.27■□□□□ 0.04
RaraP11416 Gm21749-201ENSMUST00000189343 696 ntBASIC15.27■□□□□ 0.04
RaraP11416 Gm21901-201ENSMUST00000189568 696 ntBASIC15.27■□□□□ 0.04
RaraP11416 Gm29424-201ENSMUST00000189716 696 ntBASIC15.27■□□□□ 0.04
RaraP11416 Gm28599-201ENSMUST00000189838 694 ntBASIC15.27■□□□□ 0.04
RaraP11416 Gm21867-201ENSMUST00000189917 696 ntBASIC15.27■□□□□ 0.04
RaraP11416 Gm29269-201ENSMUST00000190087 696 ntBASIC15.27■□□□□ 0.04
RaraP11416 Gm21722-201ENSMUST00000190153 696 ntBASIC15.27■□□□□ 0.04
RaraP11416 Gm28423-201ENSMUST00000190701 696 ntBASIC15.27■□□□□ 0.04
RaraP11416 Gm21899-201ENSMUST00000190745 696 ntBASIC15.27■□□□□ 0.04
RaraP11416 Gm21910-201ENSMUST00000191163 696 ntBASIC15.27■□□□□ 0.04
RaraP11416 Gm21849-201ENSMUST00000191571 696 ntBASIC15.27■□□□□ 0.04
RaraP11416 Gm28678-201ENSMUST00000191593 696 ntBASIC15.27■□□□□ 0.04
RaraP11416 Gm20910-201ENSMUST00000193268 696 ntBASIC15.27■□□□□ 0.04
RaraP11416 Gm21871-201ENSMUST00000194621 696 ntBASIC15.27■□□□□ 0.04
RaraP11416 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
RaraP11416 Gm18206-201ENSMUST00000207027 926 ntBASIC15.27■□□□□ 0.04
RaraP11416 Tlcd2-201ENSMUST00000043598 1153 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
RaraP11416 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
RaraP11416 Lrrc56-202ENSMUST00000070458 2502 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
RaraP11416 Rbfox2-209ENSMUST00000228087 1694 ntAPPRIS ALT2 BASIC15.27■□□□□ 0.03
RaraP11416 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
RaraP11416 Mboat2-201ENSMUST00000078902 2467 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
RaraP11416 Mettl3-201ENSMUST00000022767 2025 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
RaraP11416 Hcrtr1-202ENSMUST00000119423 2439 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
RaraP11416 Fbxl19-202ENSMUST00000186116 3641 ntTSL 5 BASIC15.27■□□□□ 0.03
RaraP11416 Gm11405-201ENSMUST00000118689 1556 ntBASIC15.27■□□□□ 0.03
RaraP11416 Galt-201ENSMUST00000084695 1595 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
RaraP11416 Ttc7-201ENSMUST00000041110 4614 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
RaraP11416 Bcat2-202ENSMUST00000120864 1536 ntTSL 5 BASIC15.27■□□□□ 0.03
RaraP11416 Ckmt1-202ENSMUST00000078222 1518 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
RaraP11416 Ncbp1-201ENSMUST00000030014 3010 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
RaraP11416 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RaraP11416 Gm13613-201ENSMUST00000126240 1444 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
RaraP11416 Pja1-202ENSMUST00000113790 2108 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
RaraP11416 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
RaraP11416 Mmp2-201ENSMUST00000034187 3078 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RaraP11416 Plcd1-203ENSMUST00000214470 2706 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
RaraP11416 Gpsm1-204ENSMUST00000114134 2043 ntTSL 3 BASIC15.26■□□□□ 0.03
RaraP11416 Slc45a1-201ENSMUST00000037827 3387 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
RaraP11416 Gtpbp1-201ENSMUST00000046463 3398 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RaraP11416 Eml3-201ENSMUST00000096241 3322 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
RaraP11416 Gm42466-201ENSMUST00000202099 1301 ntBASIC15.26■□□□□ 0.03
RaraP11416 Coq10a-205ENSMUST00000220027 1307 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
RaraP11416 Evx1os-201ENSMUST00000125305 2916 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
RaraP11416 Ric8b-202ENSMUST00000095385 2909 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RaraP11416 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC15.26■□□□□ 0.03
RaraP11416 Pbx2-205ENSMUST00000183827 1186 ntTSL 5 BASIC15.26■□□□□ 0.03
RaraP11416 Gm5628-201ENSMUST00000222318 1049 ntBASIC15.26■□□□□ 0.03
RaraP11416 Il31-201ENSMUST00000031389 806 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RaraP11416 Glud1-201ENSMUST00000022322 3390 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RaraP11416 Lrr1-201ENSMUST00000110621 1500 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RaraP11416 Vamp8-202ENSMUST00000142613 2076 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
RaraP11416 Nrn1-204ENSMUST00000224323 1779 ntBASIC15.26■□□□□ 0.03
RaraP11416 CT025626.1-201ENSMUST00000223735 1455 ntBASIC15.26■□□□□ 0.03
RaraP11416 Myog-201ENSMUST00000027730 1495 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RaraP11416 Lrfn2-201ENSMUST00000046254 3202 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RaraP11416 Psph-201ENSMUST00000031399 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RaraP11416 Cpne4-201ENSMUST00000057742 3959 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RaraP11416 Prkg1-202ENSMUST00000073581 2841 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
RaraP11416 Smc6-208ENSMUST00000218866 3373 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
RaraP11416 Pcdha8-201ENSMUST00000194038 5338 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RaraP11416 Il6ra-201ENSMUST00000029559 3343 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
RaraP11416 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
RaraP11416 Prkcq-201ENSMUST00000028118 3583 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RaraP11416 Btrc-201ENSMUST00000065601 2978 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 63.9 ms