Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Mcm9-206ENSMUST00000220007 3513 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Hmgb3O54879 Abi1-201ENSMUST00000078977 3027 ntAPPRIS ALT1 TSL 5 BASIC11.7□□□□□ -0.54
Hmgb3O54879 Gm19461-205ENSMUST00000191207 2566 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Hmgb3O54879 Gm7935-201ENSMUST00000100555 1278 ntBASIC11.7□□□□□ -0.54
Hmgb3O54879 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC11.7□□□□□ -0.54
Hmgb3O54879 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
Hmgb3O54879 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
Hmgb3O54879 Gm23634-201ENSMUST00000175071 91 ntBASIC11.7□□□□□ -0.54
Hmgb3O54879 Gm10231-201ENSMUST00000181584 441 ntBASIC11.7□□□□□ -0.54
Hmgb3O54879 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Hmgb3O54879 D530033B14Rik-201ENSMUST00000205412 546 ntTSL 5 BASIC11.7□□□□□ -0.54
Hmgb3O54879 Gm10175-202ENSMUST00000208752 441 ntBASIC11.7□□□□□ -0.54
Hmgb3O54879 Ube2g1-201ENSMUST00000021148 3815 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Hmgb3O54879 Gm6296-201ENSMUST00000222599 943 ntBASIC11.7□□□□□ -0.54
Hmgb3O54879 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC11.7□□□□□ -0.54
Hmgb3O54879 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC11.7□□□□□ -0.54
Hmgb3O54879 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Hmgb3O54879 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC11.7□□□□□ -0.54
Hmgb3O54879 Lhb-201ENSMUST00000072453 678 ntAPPRIS P1 TSL 2 BASIC11.7□□□□□ -0.54
Hmgb3O54879 Krtap19-3-201ENSMUST00000075284 526 ntAPPRIS P1 BASIC11.7□□□□□ -0.54
Hmgb3O54879 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Hmgb3O54879 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Hmgb3O54879 Usp24-201ENSMUST00000094933 10575 ntAPPRIS P2 TSL 5 BASIC11.7□□□□□ -0.54
Hmgb3O54879 Srsf10-205ENSMUST00000126641 3754 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Hmgb3O54879 Mical3-217ENSMUST00000207889 9204 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
Hmgb3O54879 Mau2-202ENSMUST00000168013 5323 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
Hmgb3O54879 Camta2-202ENSMUST00000100933 4383 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
Hmgb3O54879 Camta2-204ENSMUST00000108545 4377 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Hmgb3O54879 Camta2-206ENSMUST00000120261 4398 ntTSL 5 BASIC11.7□□□□□ -0.54
Hmgb3O54879 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
Hmgb3O54879 Mettl14-201ENSMUST00000029759 2741 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Hmgb3O54879 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Hmgb3O54879 Hmga2-203ENSMUST00000159699 3810 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Hmgb3O54879 Ebf4-201ENSMUST00000110286 2670 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Hmgb3O54879 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Hmgb3O54879 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Hmgb3O54879 Rab37-201ENSMUST00000021076 2210 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
Hmgb3O54879 Ap2m1-201ENSMUST00000007216 2937 ntAPPRIS P3 TSL 5 BASIC11.7□□□□□ -0.54
Hmgb3O54879 Spag1-201ENSMUST00000047348 3646 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Hmgb3O54879 Cct6a-202ENSMUST00000201414 2454 ntTSL 5 BASIC11.69□□□□□ -0.54
Hmgb3O54879 Zyx-202ENSMUST00000164375 3188 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
Hmgb3O54879 Ifnlr1-201ENSMUST00000074408 4182 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Hmgb3O54879 Sipa1-202ENSMUST00000080824 3837 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Hmgb3O54879 Gnao1-203ENSMUST00000125716 3462 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Hmgb3O54879 Ncdn-202ENSMUST00000106116 2434 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Hmgb3O54879 Gpt-201ENSMUST00000023203 1749 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Hmgb3O54879 Scara5-201ENSMUST00000022610 3794 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Hmgb3O54879 Spata13-210ENSMUST00000162945 5469 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Hmgb3O54879 Pdgfra-205ENSMUST00000201711 4088 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Hmgb3O54879 Kcnj9-202ENSMUST00000194204 2265 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Hmgb3O54879 Slc7a7-206ENSMUST00000197440 2278 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Hmgb3O54879 Mcm6-201ENSMUST00000027601 2910 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Hmgb3O54879 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Hmgb3O54879 Tdrd9-201ENSMUST00000079009 4809 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Hmgb3O54879 Lzts3-202ENSMUST00000089561 4169 ntAPPRIS P3 TSL 5 BASIC11.69□□□□□ -0.54
Hmgb3O54879 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Hmgb3O54879 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC11.69□□□□□ -0.54
Hmgb3O54879 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC11.69□□□□□ -0.54
Hmgb3O54879 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
Hmgb3O54879 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC11.69□□□□□ -0.54
Hmgb3O54879 Gm6728-201ENSMUST00000178117 1065 ntBASIC11.69□□□□□ -0.54
Hmgb3O54879 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Hmgb3O54879 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Hmgb3O54879 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Hmgb3O54879 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
Hmgb3O54879 Sfxn5-202ENSMUST00000059034 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Hmgb3O54879 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Hmgb3O54879 Apol7d-201ENSMUST00000097699 826 ntTSL 2 BASIC11.69□□□□□ -0.54
Hmgb3O54879 Pcdhga3-201ENSMUST00000073447 4720 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Hmgb3O54879 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC11.69□□□□□ -0.54
Hmgb3O54879 Plch2-208ENSMUST00000145662 1818 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Hmgb3O54879 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Hmgb3O54879 Robo1-201ENSMUST00000023600 7563 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Hmgb3O54879 Tcirg1-211ENSMUST00000145791 2729 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Hmgb3O54879 Tmem81-202ENSMUST00000188789 1751 ntAPPRIS P1 BASIC11.69□□□□□ -0.54
Hmgb3O54879 Rcn3-201ENSMUST00000019683 1462 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Hmgb3O54879 Rcn3-208ENSMUST00000211352 1453 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Hmgb3O54879 Zfp385b-203ENSMUST00000111830 2642 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Hmgb3O54879 Ilvbl-201ENSMUST00000105384 2329 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Hmgb3O54879 Ago1-201ENSMUST00000097888 7227 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Hmgb3O54879 Map7d1-202ENSMUST00000106132 3195 ntAPPRIS ALT2 TSL 2 BASIC11.69□□□□□ -0.54
Hmgb3O54879 Ankrd34a-201ENSMUST00000058943 2583 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Hmgb3O54879 Snx33-201ENSMUST00000050916 4571 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Hmgb3O54879 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Hmgb3O54879 Gm37411-201ENSMUST00000194180 2282 ntBASIC11.69□□□□□ -0.54
Hmgb3O54879 Chfr-201ENSMUST00000014812 3146 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
Hmgb3O54879 Tnfrsf21-201ENSMUST00000024708 3626 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Hmgb3O54879 Gps1-201ENSMUST00000100134 1925 ntTSL 2 BASIC11.68□□□□□ -0.54
Hmgb3O54879 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Hmgb3O54879 Atg16l1-202ENSMUST00000113186 3004 ntAPPRIS ALT1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Hmgb3O54879 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Hmgb3O54879 Pbx3-202ENSMUST00000113132 2734 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Hmgb3O54879 Aqr-201ENSMUST00000043160 4888 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
Hmgb3O54879 Epsti1-201ENSMUST00000022591 1870 ntAPPRIS P2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Hmgb3O54879 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Hmgb3O54879 Rbm47-206ENSMUST00000200775 3180 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
Hmgb3O54879 Cad-206ENSMUST00000201838 3153 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Hmgb3O54879 Abcc10-202ENSMUST00000095261 5266 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
Hmgb3O54879 D930019O06Rik-201ENSMUST00000181841 3663 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Hmgb3O54879 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 116.8 ms