Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Tmc8-202ENSMUST00000106334 2644 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Prpf40aQ9R1C7 Marveld3-202ENSMUST00000051430 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Prpf40aQ9R1C7 Lzts1-201ENSMUST00000037049 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Prpf40aQ9R1C7 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Prpf40aQ9R1C7 1700029J07Rik-201ENSMUST00000095323 2740 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Prpf40aQ9R1C7 Papd5-201ENSMUST00000066748 4489 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Prpf40aQ9R1C7 Eloa-201ENSMUST00000030427 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Prpf40aQ9R1C7 Gm11190-201ENSMUST00000132487 3414 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Prpf40aQ9R1C7 Poli-202ENSMUST00000121674 2778 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Prpf40aQ9R1C7 2700080J24Rik-201ENSMUST00000205314 1662 ntBASIC15.61■□□□□ 0.09
Prpf40aQ9R1C7 Gins2-201ENSMUST00000034278 3900 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Prpf40aQ9R1C7 Nfatc1-202ENSMUST00000078049 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
Prpf40aQ9R1C7 Mto1-201ENSMUST00000034896 2366 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Prpf40aQ9R1C7 Zcwpw2-202ENSMUST00000187329 1469 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Prpf40aQ9R1C7 Scarf1-202ENSMUST00000118243 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
Prpf40aQ9R1C7 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Prpf40aQ9R1C7 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC15.61■□□□□ 0.09
Prpf40aQ9R1C7 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Prpf40aQ9R1C7 Gm13883-202ENSMUST00000151310 1156 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Prpf40aQ9R1C7 Gm10605-201ENSMUST00000182342 665 ntTSL 3 BASIC15.61■□□□□ 0.09
Prpf40aQ9R1C7 CR974585.1-201ENSMUST00000221790 1263 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Prpf40aQ9R1C7 Gm6594-201ENSMUST00000097278 288 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
Prpf40aQ9R1C7 Tbc1d5-205ENSMUST00000224528 4764 ntAPPRIS ALT2 BASIC15.61■□□□□ 0.09
Prpf40aQ9R1C7 Fasn-201ENSMUST00000055655 10050 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
Prpf40aQ9R1C7 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
Prpf40aQ9R1C7 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
Prpf40aQ9R1C7 Nfasc-208ENSMUST00000188307 3049 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Prpf40aQ9R1C7 Slc25a47-201ENSMUST00000057026 1580 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Prpf40aQ9R1C7 Elovl1-201ENSMUST00000006557 1811 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Prpf40aQ9R1C7 Plxdc2-203ENSMUST00000114703 2061 ntTSL 5 BASIC15.61■□□□□ 0.09
Prpf40aQ9R1C7 Zfp664-201ENSMUST00000111417 4092 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Prpf40aQ9R1C7 Nid2-201ENSMUST00000022340 4876 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Prpf40aQ9R1C7 Ankrd6-202ENSMUST00000084748 4354 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
Prpf40aQ9R1C7 Kpna6-201ENSMUST00000003828 2195 ntAPPRIS ALT1 TSL 5 BASIC15.6■□□□□ 0.09
Prpf40aQ9R1C7 Fam57b-203ENSMUST00000205324 1915 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Prpf40aQ9R1C7 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Prpf40aQ9R1C7 Gpr88-201ENSMUST00000090473 3469 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Prpf40aQ9R1C7 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Prpf40aQ9R1C7 Klhdc8b-207ENSMUST00000193286 2956 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Prpf40aQ9R1C7 Efs-201ENSMUST00000022813 2705 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Prpf40aQ9R1C7 Celf4-203ENSMUST00000223704 2492 ntAPPRIS ALT1 BASIC15.6■□□□□ 0.09
Prpf40aQ9R1C7 Prdm10-202ENSMUST00000117389 1952 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Prpf40aQ9R1C7 Ubxn4-201ENSMUST00000027592 4113 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Prpf40aQ9R1C7 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
Prpf40aQ9R1C7 Csnk1d-201ENSMUST00000018274 3675 ntAPPRIS P4 TSL 1 (best) BASIC15.6■□□□□ 0.09
Prpf40aQ9R1C7 Narfl-204ENSMUST00000134108 2062 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Prpf40aQ9R1C7 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
Prpf40aQ9R1C7 Zkscan4-201ENSMUST00000062609 2400 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
Prpf40aQ9R1C7 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Prpf40aQ9R1C7 Os9-201ENSMUST00000080975 2458 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
Prpf40aQ9R1C7 Lman2-201ENSMUST00000021940 4315 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Prpf40aQ9R1C7 Fbxo10-201ENSMUST00000052236 4635 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Prpf40aQ9R1C7 Trim32-201ENSMUST00000050850 3194 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Prpf40aQ9R1C7 Klhdc4-210ENSMUST00000174717 1662 ntTSL 5 BASIC15.6■□□□□ 0.09
Prpf40aQ9R1C7 Slc25a19-212ENSMUST00000178003 2614 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
Prpf40aQ9R1C7 Kctd14-201ENSMUST00000050732 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Prpf40aQ9R1C7 Tmem110-201ENSMUST00000006701 3742 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Prpf40aQ9R1C7 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Prpf40aQ9R1C7 Zscan22-204ENSMUST00000120809 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Prpf40aQ9R1C7 Tpm1-202ENSMUST00000034928 1824 ntTSL 5 BASIC15.59■□□□□ 0.09
Prpf40aQ9R1C7 Kdm2b-201ENSMUST00000031435 3532 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Prpf40aQ9R1C7 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC15.59■□□□□ 0.09
Prpf40aQ9R1C7 AC159649.2-201ENSMUST00000222984 3223 ntBASIC15.59■□□□□ 0.09
Prpf40aQ9R1C7 Nr2f1-205ENSMUST00000150498 2588 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Prpf40aQ9R1C7 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Prpf40aQ9R1C7 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Prpf40aQ9R1C7 Mmab-202ENSMUST00000112245 644 ntTSL 3 BASIC15.59■□□□□ 0.09
Prpf40aQ9R1C7 Gm14701-201ENSMUST00000117156 348 ntBASIC15.59■□□□□ 0.09
Prpf40aQ9R1C7 Gm11899-201ENSMUST00000142373 745 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Prpf40aQ9R1C7 Vdac2-209ENSMUST00000173456 956 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
Prpf40aQ9R1C7 Mir124-2hg-206ENSMUST00000189754 525 ntTSL 3 BASIC15.59■□□□□ 0.09
Prpf40aQ9R1C7 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC15.59■□□□□ 0.09
Prpf40aQ9R1C7 Ggn-201ENSMUST00000033886 588 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Prpf40aQ9R1C7 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC15.59■□□□□ 0.09
Prpf40aQ9R1C7 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
Prpf40aQ9R1C7 Gm6471-201ENSMUST00000097935 805 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Prpf40aQ9R1C7 Yes1-201ENSMUST00000072311 4586 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Prpf40aQ9R1C7 Gm15850-201ENSMUST00000134998 2049 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Prpf40aQ9R1C7 Atp13a2-201ENSMUST00000037055 3956 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
Prpf40aQ9R1C7 Tmem37-201ENSMUST00000056089 1311 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Prpf40aQ9R1C7 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Prpf40aQ9R1C7 Gm43738-201ENSMUST00000200659 2635 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
Prpf40aQ9R1C7 Ttyh2-201ENSMUST00000045779 3486 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Prpf40aQ9R1C7 Rundc1-201ENSMUST00000040561 3223 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
Prpf40aQ9R1C7 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.09
Prpf40aQ9R1C7 Tbc1d16-203ENSMUST00000207655 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.09
Prpf40aQ9R1C7 2410018L13Rik-205ENSMUST00000149246 3370 ntTSL 2 BASIC15.58■□□□□ 0.09
Prpf40aQ9R1C7 Spock2-201ENSMUST00000121820 5238 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.09
Prpf40aQ9R1C7 Ablim1-202ENSMUST00000099294 6232 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.09
Prpf40aQ9R1C7 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC15.58■□□□□ 0.08
Prpf40aQ9R1C7 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Prpf40aQ9R1C7 Opa1-206ENSMUST00000160597 6230 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Prpf40aQ9R1C7 Pde10a-202ENSMUST00000089085 7717 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
Prpf40aQ9R1C7 Mcur1-201ENSMUST00000021800 4339 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Prpf40aQ9R1C7 Gamt-202ENSMUST00000105363 988 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Prpf40aQ9R1C7 Abhd11-202ENSMUST00000111216 972 ntTSL 3 BASIC15.58■□□□□ 0.08
Prpf40aQ9R1C7 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC15.58■□□□□ 0.08
Prpf40aQ9R1C7 Btf3-204ENSMUST00000134542 780 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
Prpf40aQ9R1C7 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC15.58■□□□□ 0.08
Prpf40aQ9R1C7 AC155937.1-202ENSMUST00000156229 621 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 33.7 ms