Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Rpn2-202ENSMUST00000116380 2756 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Lima1Q9ERG0 Snph-201ENSMUST00000028951 4730 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Lima1Q9ERG0 Csk-209ENSMUST00000217314 2162 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Lima1Q9ERG0 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Lima1Q9ERG0 Chac1-201ENSMUST00000028780 1637 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Lima1Q9ERG0 Col1a2-201ENSMUST00000031668 5348 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Lima1Q9ERG0 Sipa1-202ENSMUST00000080824 3837 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Lima1Q9ERG0 Plch2-201ENSMUST00000105631 5053 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Lima1Q9ERG0 Gm8281-202ENSMUST00000163719 1954 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Lima1Q9ERG0 Pgm5-201ENSMUST00000047666 3239 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Lima1Q9ERG0 Mau2-201ENSMUST00000050561 5369 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Lima1Q9ERG0 Wapl-205ENSMUST00000169910 4066 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Lima1Q9ERG0 Cntfr-204ENSMUST00000102962 1926 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Lima1Q9ERG0 Hapln4-201ENSMUST00000007738 3648 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Lima1Q9ERG0 Ilvbl-203ENSMUST00000218215 2331 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Lima1Q9ERG0 Mta2-201ENSMUST00000096240 3135 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Lima1Q9ERG0 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Lima1Q9ERG0 Gan-201ENSMUST00000064488 2652 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Lima1Q9ERG0 Pnpla2-203ENSMUST00000164016 2625 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Lima1Q9ERG0 Kmt5c-203ENSMUST00000108583 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Lima1Q9ERG0 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Lima1Q9ERG0 Col5a1-201ENSMUST00000028280 8406 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Lima1Q9ERG0 Desi1-206ENSMUST00000152227 2934 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Lima1Q9ERG0 Gdf10-201ENSMUST00000168727 5210 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Lima1Q9ERG0 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
Lima1Q9ERG0 Rnf152-201ENSMUST00000058688 8492 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Lima1Q9ERG0 Sema6c-203ENSMUST00000107217 3595 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Lima1Q9ERG0 Arhgap33-203ENSMUST00000207858 4337 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Lima1Q9ERG0 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Lima1Q9ERG0 Slc8b1-204ENSMUST00000111890 2775 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Lima1Q9ERG0 AI593442-203ENSMUST00000213937 5674 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
Lima1Q9ERG0 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC13.99□□□□□ -0.17
Lima1Q9ERG0 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
Lima1Q9ERG0 Rpl31-205ENSMUST00000194746 703 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Lima1Q9ERG0 Sox2ot-202ENSMUST00000196058 753 ntTSL 3 BASIC13.99□□□□□ -0.17
Lima1Q9ERG0 4930500L23Rik-201ENSMUST00000198000 747 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Lima1Q9ERG0 Gm5364-201ENSMUST00000216789 889 ntBASIC13.99□□□□□ -0.17
Lima1Q9ERG0 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC13.99□□□□□ -0.17
Lima1Q9ERG0 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Lima1Q9ERG0 Rims1-201ENSMUST00000081544 5954 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
Lima1Q9ERG0 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Lima1Q9ERG0 Naa30-201ENSMUST00000037362 4464 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
Lima1Q9ERG0 Osbp2-202ENSMUST00000101632 2697 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
Lima1Q9ERG0 Slc11a2-201ENSMUST00000023774 3025 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
Lima1Q9ERG0 Vwc2-202ENSMUST00000109681 3371 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Lima1Q9ERG0 Pik3cd-214ENSMUST00000177654 4765 ntAPPRIS P4 TSL 5 BASIC13.99□□□□□ -0.17
Lima1Q9ERG0 Ntng2-204ENSMUST00000102873 1593 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Lima1Q9ERG0 Ggt7-201ENSMUST00000029131 2614 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Lima1Q9ERG0 Il6ra-201ENSMUST00000029559 3343 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
Lima1Q9ERG0 Spata5-209ENSMUST00000198968 2916 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Lima1Q9ERG0 Otop2-202ENSMUST00000106544 2220 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Lima1Q9ERG0 Grin2c-201ENSMUST00000003351 4279 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
Lima1Q9ERG0 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Lima1Q9ERG0 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Lima1Q9ERG0 Cad-206ENSMUST00000201838 3153 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Lima1Q9ERG0 Ube3b-201ENSMUST00000074002 5194 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Lima1Q9ERG0 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Lima1Q9ERG0 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Lima1Q9ERG0 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Lima1Q9ERG0 Fam198a-204ENSMUST00000215990 2149 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Lima1Q9ERG0 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Lima1Q9ERG0 Fbxo41-202ENSMUST00000161078 6562 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Lima1Q9ERG0 Esm1-201ENSMUST00000038144 2097 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Lima1Q9ERG0 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC13.98□□□□□ -0.17
Lima1Q9ERG0 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Lima1Q9ERG0 Lrig2-205ENSMUST00000198332 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Lima1Q9ERG0 Elfn2-201ENSMUST00000088592 4846 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Lima1Q9ERG0 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Lima1Q9ERG0 Hk3-208ENSMUST00000153665 2945 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Lima1Q9ERG0 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Lima1Q9ERG0 Sytl1-201ENSMUST00000030674 1951 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Lima1Q9ERG0 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Lima1Q9ERG0 Mrpl58-209ENSMUST00000153983 2596 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Lima1Q9ERG0 Cyp20a1-201ENSMUST00000060608 2223 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Lima1Q9ERG0 Satb2-201ENSMUST00000042857 6277 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Lima1Q9ERG0 G3bp2-203ENSMUST00000167918 4232 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Lima1Q9ERG0 Gm42878-202ENSMUST00000200170 4783 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
Lima1Q9ERG0 Pja1-202ENSMUST00000113790 2108 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
Lima1Q9ERG0 Gm14042-201ENSMUST00000120139 833 ntBASIC13.98□□□□□ -0.17
Lima1Q9ERG0 Kctd14-202ENSMUST00000121987 1210 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Lima1Q9ERG0 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Lima1Q9ERG0 Grip1os3-202ENSMUST00000146294 957 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Lima1Q9ERG0 Cystm1-205ENSMUST00000152804 445 ntAPPRIS P2 TSL 3 BASIC13.98□□□□□ -0.17
Lima1Q9ERG0 Gm5177-201ENSMUST00000183092 997 ntBASIC13.98□□□□□ -0.17
Lima1Q9ERG0 Mir7036b-201ENSMUST00000184791 63 ntBASIC13.98□□□□□ -0.17
Lima1Q9ERG0 H2-Bl-211ENSMUST00000195838 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Lima1Q9ERG0 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC13.98□□□□□ -0.17
Lima1Q9ERG0 Gm44596-201ENSMUST00000204223 647 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
Lima1Q9ERG0 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC13.98□□□□□ -0.17
Lima1Q9ERG0 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC13.98□□□□□ -0.17
Lima1Q9ERG0 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Lima1Q9ERG0 Ccne2-202ENSMUST00000108324 2908 ntAPPRIS P4 TSL 1 (best) BASIC13.98□□□□□ -0.17
Lima1Q9ERG0 Tmem169-201ENSMUST00000027380 2928 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Lima1Q9ERG0 Cep97-202ENSMUST00000117468 2887 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Lima1Q9ERG0 Arl6ip6-201ENSMUST00000028336 2548 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Lima1Q9ERG0 Nup88-201ENSMUST00000035283 2450 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Lima1Q9ERG0 Tdrd5-201ENSMUST00000121146 3759 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Lima1Q9ERG0 Plcd1-203ENSMUST00000214470 2706 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Lima1Q9ERG0 Upk1a-201ENSMUST00000006476 1421 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Lima1Q9ERG0 Irak2-202ENSMUST00000089022 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 67.4 ms