Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Ddx56Q9D0R4 Ddhd1-203ENSMUST00000111828 9802 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Ddx56Q9D0R4 Mto1-201ENSMUST00000034896 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Ddx56Q9D0R4 Muc20-201ENSMUST00000041123 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Ddx56Q9D0R4 Tap2-201ENSMUST00000025197 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Ddx56Q9D0R4 Tdrd5-201ENSMUST00000121146 3759 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Ddx56Q9D0R4 Slc39a8-202ENSMUST00000081978 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Ddx56Q9D0R4 Mir449b-201ENSMUST00000104833 80 ntBASIC14.9□□□□□ -0.02
Ddx56Q9D0R4 H60b-201ENSMUST00000105522 1029 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Ddx56Q9D0R4 Arfrp1-202ENSMUST00000108808 1133 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Ddx56Q9D0R4 Gm5678-201ENSMUST00000120115 939 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Ddx56Q9D0R4 Kif16bos-201ENSMUST00000124774 495 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Ddx56Q9D0R4 1700110K17Rik-202ENSMUST00000156511 927 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Ddx56Q9D0R4 Gm26308-201ENSMUST00000157768 69 ntBASIC14.9□□□□□ -0.02
Ddx56Q9D0R4 Nabp1-202ENSMUST00000185534 708 ntTSL 2 BASIC14.9□□□□□ -0.02
Ddx56Q9D0R4 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
Ddx56Q9D0R4 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
Ddx56Q9D0R4 Gm5779-201ENSMUST00000218467 910 ntBASIC14.9□□□□□ -0.02
Ddx56Q9D0R4 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Ddx56Q9D0R4 Gm8396-201ENSMUST00000057361 823 ntBASIC14.9□□□□□ -0.02
Ddx56Q9D0R4 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Ddx56Q9D0R4 Adamts15-201ENSMUST00000065112 5928 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Ddx56Q9D0R4 Foxi2-201ENSMUST00000060356 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Ddx56Q9D0R4 Trf-201ENSMUST00000035158 2571 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Ddx56Q9D0R4 Irf7-203ENSMUST00000106023 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Ddx56Q9D0R4 Prkcsh-205ENSMUST00000216344 2228 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
Ddx56Q9D0R4 Phgdh-201ENSMUST00000065793 1893 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Ddx56Q9D0R4 Fstl5-201ENSMUST00000038364 5107 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Ddx56Q9D0R4 AC166574.6-201ENSMUST00000227889 1806 ntBASIC14.89□□□□□ -0.03
Ddx56Q9D0R4 Ints3-203ENSMUST00000196530 3778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ddx56Q9D0R4 Myh14-202ENSMUST00000107899 6390 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ddx56Q9D0R4 Ubc-203ENSMUST00000156249 2581 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
Ddx56Q9D0R4 Gpr137c-201ENSMUST00000146150 3917 ntAPPRIS P2 TSL 5 BASIC14.89□□□□□ -0.03
Ddx56Q9D0R4 Akap17b-201ENSMUST00000051906 6003 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Ddx56Q9D0R4 Gm12462-201ENSMUST00000140826 3056 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Ddx56Q9D0R4 AC126549.2-201ENSMUST00000223997 1976 ntBASIC14.89□□□□□ -0.03
Ddx56Q9D0R4 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ddx56Q9D0R4 Pcsk5-201ENSMUST00000025618 6675 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Ddx56Q9D0R4 Slc9a3-201ENSMUST00000036208 2490 ntAPPRIS P2 TSL 2 BASIC14.89□□□□□ -0.03
Ddx56Q9D0R4 2410018L13Rik-205ENSMUST00000149246 3370 ntTSL 2 BASIC14.89□□□□□ -0.03
Ddx56Q9D0R4 Prrxl1-203ENSMUST00000187377 1629 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Ddx56Q9D0R4 Lpcat1-208ENSMUST00000223060 2141 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Ddx56Q9D0R4 Iah1-204ENSMUST00000223345 1890 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Ddx56Q9D0R4 Zdhhc23-201ENSMUST00000036321 1380 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Ddx56Q9D0R4 Cluh-202ENSMUST00000117818 4284 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ddx56Q9D0R4 Sh2b3-202ENSMUST00000086310 4195 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ddx56Q9D0R4 Gm15199-201ENSMUST00000129933 542 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Ddx56Q9D0R4 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC14.89□□□□□ -0.03
Ddx56Q9D0R4 Gm36236-201ENSMUST00000220780 701 ntTSL 3 BASIC14.89□□□□□ -0.03
Ddx56Q9D0R4 Cnpy2-201ENSMUST00000026446 763 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Ddx56Q9D0R4 Tmem242-201ENSMUST00000005053 948 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ddx56Q9D0R4 Mir125a-201ENSMUST00000083545 68 ntBASIC14.89□□□□□ -0.03
Ddx56Q9D0R4 Papd7-201ENSMUST00000044081 3994 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ddx56Q9D0R4 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ddx56Q9D0R4 Amhr2-201ENSMUST00000023809 1938 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ddx56Q9D0R4 Trp53bp2-201ENSMUST00000117245 4361 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Ddx56Q9D0R4 Dimt1-201ENSMUST00000022203 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ddx56Q9D0R4 Efs-201ENSMUST00000022813 2705 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ddx56Q9D0R4 Fbxo41-201ENSMUST00000159062 6505 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ddx56Q9D0R4 Adam15-204ENSMUST00000107448 2893 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
Ddx56Q9D0R4 Klhl12-203ENSMUST00000116528 3277 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Ddx56Q9D0R4 Htr3a-202ENSMUST00000217289 1987 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ddx56Q9D0R4 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Ddx56Q9D0R4 Ski-202ENSMUST00000084103 5309 ntTSL 5 BASIC14.89□□□□□ -0.03
Ddx56Q9D0R4 Tpd52-203ENSMUST00000091355 3081 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Ddx56Q9D0R4 Ntf3-201ENSMUST00000050484 1483 ntAPPRIS P3 TSL 2 BASIC14.89□□□□□ -0.03
Ddx56Q9D0R4 Plekha1-203ENSMUST00000120441 3777 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
Ddx56Q9D0R4 Myh14-201ENSMUST00000048102 6457 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ddx56Q9D0R4 Dnm1-205ENSMUST00000113365 3257 ntAPPRIS ALT1 TSL 5 BASIC14.88□□□□□ -0.03
Ddx56Q9D0R4 Pld5-202ENSMUST00000111166 1370 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Ddx56Q9D0R4 Olfr317-203ENSMUST00000216196 2781 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
Ddx56Q9D0R4 Tmub2-205ENSMUST00000156326 2249 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ddx56Q9D0R4 Camkk2-201ENSMUST00000111668 4861 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ddx56Q9D0R4 Prkacb-202ENSMUST00000102515 4347 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ddx56Q9D0R4 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Ddx56Q9D0R4 Fubp1-206ENSMUST00000196739 2526 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ddx56Q9D0R4 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ddx56Q9D0R4 Rasa4-202ENSMUST00000100570 2660 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Ddx56Q9D0R4 AW822073-202ENSMUST00000204003 1959 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
Ddx56Q9D0R4 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC14.88□□□□□ -0.03
Ddx56Q9D0R4 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Ddx56Q9D0R4 Hras-203ENSMUST00000124314 1073 ntTSL 5 BASIC14.88□□□□□ -0.03
Ddx56Q9D0R4 1700021F05Rik-202ENSMUST00000147196 860 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ddx56Q9D0R4 AA543401-201ENSMUST00000164248 1269 ntBASIC14.88□□□□□ -0.03
Ddx56Q9D0R4 Gm38182-203ENSMUST00000192984 993 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Ddx56Q9D0R4 Pcdhgc5-204ENSMUST00000193941 593 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Ddx56Q9D0R4 Ighv8-14-201ENSMUST00000196781 358 ntBASIC14.88□□□□□ -0.03
Ddx56Q9D0R4 Gm42854-201ENSMUST00000201262 722 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Ddx56Q9D0R4 AC090659.2-201ENSMUST00000225378 1186 ntBASIC14.88□□□□□ -0.03
Ddx56Q9D0R4 Ndufc2-201ENSMUST00000032882 683 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ddx56Q9D0R4 Gstm1-201ENSMUST00000004140 1289 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ddx56Q9D0R4 Crhr2-209ENSMUST00000213026 1443 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ddx56Q9D0R4 Car10-203ENSMUST00000107858 2742 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Ddx56Q9D0R4 Jaml-204ENSMUST00000215880 1704 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ddx56Q9D0R4 Olfr1372-ps1-202ENSMUST00000203403 9812 ntTSL 5 BASIC14.88□□□□□ -0.03
Ddx56Q9D0R4 Mdfic-203ENSMUST00000125326 3635 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Ddx56Q9D0R4 Angptl7-201ENSMUST00000030840 2157 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ddx56Q9D0R4 Adam23-205ENSMUST00000114107 6110 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
Ddx56Q9D0R4 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC14.88□□□□□ -0.03
Ddx56Q9D0R4 Ankrd33b-204ENSMUST00000123325 7466 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 29.7 ms