Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Tgif2-ps2-201ENSMUST00000061746 711 ntBASIC16.69■□□□□ 0.26
Trim56Q80VI1 Olfr1410-201ENSMUST00000079790 969 ntTSL 5 BASIC16.69■□□□□ 0.26
Trim56Q80VI1 Mpl-203ENSMUST00000106375 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trim56Q80VI1 Wls-205ENSMUST00000198878 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trim56Q80VI1 Stk16-201ENSMUST00000027401 2876 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trim56Q80VI1 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trim56Q80VI1 Iah1-204ENSMUST00000223345 1890 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Trim56Q80VI1 Ccdc158-203ENSMUST00000150359 3353 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Trim56Q80VI1 Gm26788-201ENSMUST00000181692 1750 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Trim56Q80VI1 Gm29683-203ENSMUST00000209071 2488 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Trim56Q80VI1 Acox3-204ENSMUST00000114238 2825 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trim56Q80VI1 Ppfia3-201ENSMUST00000003961 4647 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trim56Q80VI1 Tbx6-201ENSMUST00000094037 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trim56Q80VI1 Pwwp2a-201ENSMUST00000061070 3277 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trim56Q80VI1 Enpp6-202ENSMUST00000119686 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trim56Q80VI1 Gm26576-201ENSMUST00000181018 1977 ntTSL 5 BASIC16.68■□□□□ 0.26
Trim56Q80VI1 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trim56Q80VI1 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Trim56Q80VI1 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trim56Q80VI1 Cmss1-201ENSMUST00000114371 930 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trim56Q80VI1 Rpl34-203ENSMUST00000133802 711 ntTSL 2 BASIC16.68■□□□□ 0.26
Trim56Q80VI1 Cenpa-206ENSMUST00000149759 346 ntTSL 3 BASIC16.68■□□□□ 0.26
Trim56Q80VI1 Mir6977-201ENSMUST00000184960 64 ntBASIC16.68■□□□□ 0.26
Trim56Q80VI1 C330022C24Rik-201ENSMUST00000190581 1077 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Trim56Q80VI1 Coa6-202ENSMUST00000211868 564 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trim56Q80VI1 AC124732.1-201ENSMUST00000221551 910 ntBASIC16.68■□□□□ 0.26
Trim56Q80VI1 Il11ra1-201ENSMUST00000098132 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trim56Q80VI1 Gm6871-201ENSMUST00000073410 1430 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
Trim56Q80VI1 Car7-202ENSMUST00000159416 1943 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Trim56Q80VI1 Pja1-205ENSMUST00000167246 2666 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trim56Q80VI1 Ube2g1-203ENSMUST00000138247 3931 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Trim56Q80VI1 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trim56Q80VI1 Mypn-202ENSMUST00000218978 1833 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Trim56Q80VI1 Tmem86b-202ENSMUST00000205360 1344 ntTSL 2 BASIC16.68■□□□□ 0.26
Trim56Q80VI1 Osbpl9-202ENSMUST00000084366 3134 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Trim56Q80VI1 Gm42471-201ENSMUST00000201457 1865 ntBASIC16.67■□□□□ 0.26
Trim56Q80VI1 Zfp647-201ENSMUST00000048854 1608 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim56Q80VI1 Nsd3-211ENSMUST00000155861 2834 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Trim56Q80VI1 Adk-201ENSMUST00000045376 1782 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim56Q80VI1 Krt36-201ENSMUST00000107416 1671 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Trim56Q80VI1 Crip3-202ENSMUST00000113465 1035 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Trim56Q80VI1 Gfpt1-203ENSMUST00000113657 1200 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Trim56Q80VI1 Crybb3-203ENSMUST00000118226 892 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
Trim56Q80VI1 Gm15747-202ENSMUST00000151096 524 ntTSL 3 BASIC16.67■□□□□ 0.26
Trim56Q80VI1 Gm21854-201ENSMUST00000179901 471 ntBASIC16.67■□□□□ 0.26
Trim56Q80VI1 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Trim56Q80VI1 2900022M07Rik-201ENSMUST00000193912 1017 ntBASIC16.67■□□□□ 0.26
Trim56Q80VI1 Gm44855-201ENSMUST00000205725 362 ntBASIC16.67■□□□□ 0.26
Trim56Q80VI1 Gm31816-201ENSMUST00000209388 1294 ntTSL 5 BASIC16.67■□□□□ 0.26
Trim56Q80VI1 Gm20445-201ENSMUST00000061905 565 ntBASIC16.67■□□□□ 0.26
Trim56Q80VI1 Crybb3-201ENSMUST00000076069 816 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim56Q80VI1 Immp2l-201ENSMUST00000080160 239 ntTSL 3 BASIC16.67■□□□□ 0.26
Trim56Q80VI1 Ror2-201ENSMUST00000021918 3985 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim56Q80VI1 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim56Q80VI1 Oxr1-206ENSMUST00000170127 4251 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Trim56Q80VI1 Gpt-201ENSMUST00000023203 1749 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim56Q80VI1 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim56Q80VI1 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC16.67■□□□□ 0.26
Trim56Q80VI1 Cep295nl-202ENSMUST00000168100 1602 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
Trim56Q80VI1 AC159196.2-201ENSMUST00000224082 1622 ntBASIC16.67■□□□□ 0.26
Trim56Q80VI1 Yap1-201ENSMUST00000065353 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trim56Q80VI1 Ablim3-201ENSMUST00000049378 4532 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim56Q80VI1 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Trim56Q80VI1 Gm26565-201ENSMUST00000181642 1968 ntTSL 5 BASIC16.66■□□□□ 0.26
Trim56Q80VI1 Capn7-201ENSMUST00000022451 3648 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim56Q80VI1 Adcy3-204ENSMUST00000127756 4672 ntAPPRIS P3 TSL 5 BASIC16.66■□□□□ 0.26
Trim56Q80VI1 Ccdc69-202ENSMUST00000108880 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim56Q80VI1 Rpl36al-203ENSMUST00000110620 757 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
Trim56Q80VI1 Ctu2-201ENSMUST00000116412 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim56Q80VI1 Gm13994-201ENSMUST00000137397 513 ntTSL 5 BASIC16.66■□□□□ 0.26
Trim56Q80VI1 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim56Q80VI1 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
Trim56Q80VI1 Gm10766-202ENSMUST00000194123 606 ntBASIC16.66■□□□□ 0.26
Trim56Q80VI1 Tcta-203ENSMUST00000195615 597 ntTSL 5 BASIC16.66■□□□□ 0.26
Trim56Q80VI1 Aqp10-ps-201ENSMUST00000199555 611 ntBASIC16.66■□□□□ 0.26
Trim56Q80VI1 AI467606-202ENSMUST00000206102 832 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Trim56Q80VI1 Gm4756-204ENSMUST00000209038 990 ntTSL 5 BASIC16.66■□□□□ 0.26
Trim56Q80VI1 Gm7730-201ENSMUST00000212486 454 ntBASIC16.66■□□□□ 0.26
Trim56Q80VI1 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim56Q80VI1 CT025535.1-201ENSMUST00000227172 491 ntBASIC16.66■□□□□ 0.26
Trim56Q80VI1 Arl3-201ENSMUST00000026009 822 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim56Q80VI1 Chrnb1-201ENSMUST00000045971 2155 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim56Q80VI1 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Trim56Q80VI1 C2cd2l-201ENSMUST00000065080 4337 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim56Q80VI1 Erc1-207ENSMUST00000183911 3865 ntTSL 5 BASIC16.66■□□□□ 0.26
Trim56Q80VI1 Tpk1-201ENSMUST00000067888 2671 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim56Q80VI1 Irf7-203ENSMUST00000106023 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim56Q80VI1 Gatad2a-203ENSMUST00000177851 5007 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Trim56Q80VI1 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim56Q80VI1 Vav1-203ENSMUST00000112870 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim56Q80VI1 Fem1b-201ENSMUST00000034775 6785 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trim56Q80VI1 A330035P11Rik-202ENSMUST00000144926 3074 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Trim56Q80VI1 Tmem19-203ENSMUST00000217884 2799 ntTSL 5 BASIC16.66■□□□□ 0.26
Trim56Q80VI1 Otop2-201ENSMUST00000055490 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim56Q80VI1 Gm13127-201ENSMUST00000118978 1389 ntBASIC16.65■□□□□ 0.26
Trim56Q80VI1 Galnt13-203ENSMUST00000112635 7531 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim56Q80VI1 Papd7-201ENSMUST00000044081 3994 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim56Q80VI1 Adamts17-202ENSMUST00000107478 6416 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Trim56Q80VI1 Rad17-202ENSMUST00000177848 2392 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim56Q80VI1 Rundc1-201ENSMUST00000040561 3223 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 26.7 ms