Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Ighv4-1-201ENSMUST00000103464 414 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Rfx3P48381 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Rfx3P48381 Edn3-203ENSMUST00000140908 731 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Rfx3P48381 Mir3113-201ENSMUST00000175478 76 ntBASIC12.81□□□□□ -0.36
Rfx3P48381 Gm2213-201ENSMUST00000197485 688 ntBASIC12.81□□□□□ -0.36
Rfx3P48381 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC12.81□□□□□ -0.36
Rfx3P48381 CT025555.1-201ENSMUST00000225901 1217 ntBASIC12.81□□□□□ -0.36
Rfx3P48381 AC155729.1-201ENSMUST00000227758 544 ntBASIC12.81□□□□□ -0.36
Rfx3P48381 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Rfx3P48381 Pmf1-201ENSMUST00000056370 1007 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Rfx3P48381 Mapk8-201ENSMUST00000022504 2587 ntAPPRIS P5 TSL 1 (best) BASIC12.81□□□□□ -0.36
Rfx3P48381 Pde12-201ENSMUST00000052932 7725 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Rfx3P48381 Opa1-201ENSMUST00000038867 3230 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Rfx3P48381 Rnf144a-201ENSMUST00000020971 5164 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Rfx3P48381 Tex44-201ENSMUST00000046004 1724 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Rfx3P48381 Tm9sf1-201ENSMUST00000002391 2382 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Rfx3P48381 Gcat-201ENSMUST00000006544 2365 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Rfx3P48381 Txnrd3-201ENSMUST00000000828 2836 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Rfx3P48381 Celsr1-201ENSMUST00000016172 10879 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Rfx3P48381 Scyl3-201ENSMUST00000027876 4368 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Rfx3P48381 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Rfx3P48381 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Rfx3P48381 Tfe3-211ENSMUST00000137467 3390 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Rfx3P48381 Kcng1-202ENSMUST00000109191 4089 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Rfx3P48381 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Rfx3P48381 Cplx2-201ENSMUST00000026985 4928 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
Rfx3P48381 Pcdh7-202ENSMUST00000094783 3752 ntAPPRIS ALT1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Rfx3P48381 Gm17619-201ENSMUST00000180625 1449 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Rfx3P48381 Rnpepl1-201ENSMUST00000027487 3337 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Rfx3P48381 Tbkbp1-201ENSMUST00000066078 3338 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Rfx3P48381 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Rfx3P48381 Kcnd3-203ENSMUST00000118360 2668 ntAPPRIS P4 TSL 5 BASIC12.8□□□□□ -0.36
Rfx3P48381 Plcb2-202ENSMUST00000102524 5145 ntAPPRIS P3 TSL 2 BASIC12.8□□□□□ -0.36
Rfx3P48381 Pxdn-202ENSMUST00000122328 6614 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Rfx3P48381 Ncor2-203ENSMUST00000111393 8661 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Rfx3P48381 Zfp202-201ENSMUST00000026693 3461 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Rfx3P48381 Prrx1-204ENSMUST00000174397 6527 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Rfx3P48381 Rnf114-201ENSMUST00000078050 2502 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Rfx3P48381 Prmt7-203ENSMUST00000109297 1094 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Rfx3P48381 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC12.8□□□□□ -0.36
Rfx3P48381 Gm12892-201ENSMUST00000117367 1146 ntBASIC12.8□□□□□ -0.36
Rfx3P48381 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Rfx3P48381 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC12.8□□□□□ -0.36
Rfx3P48381 Ccnh-202ENSMUST00000163600 1055 ntTSL 5 BASIC12.8□□□□□ -0.36
Rfx3P48381 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Rfx3P48381 9130024F11Rik-204ENSMUST00000187927 517 ntTSL 5 BASIC12.8□□□□□ -0.36
Rfx3P48381 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Rfx3P48381 Gm45098-201ENSMUST00000207179 657 ntBASIC12.8□□□□□ -0.36
Rfx3P48381 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Rfx3P48381 Mrps36-202ENSMUST00000078573 571 ntAPPRIS ALT1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Rfx3P48381 Rgs16-201ENSMUST00000027748 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Rfx3P48381 Ube2k-210ENSMUST00000202679 4682 ntTSL 5 BASIC12.8□□□□□ -0.36
Rfx3P48381 Nat8f6-202ENSMUST00000174143 1571 ntAPPRIS P1 TSL 3 BASIC12.8□□□□□ -0.36
Rfx3P48381 Nfkbia-201ENSMUST00000021413 1578 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Rfx3P48381 Gm11127-201ENSMUST00000113742 1344 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Rfx3P48381 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Rfx3P48381 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Rfx3P48381 Supt6-201ENSMUST00000002121 6488 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Rfx3P48381 Rarg-201ENSMUST00000043172 2953 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Rfx3P48381 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Rfx3P48381 Nfatc1-202ENSMUST00000078049 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Rfx3P48381 Gpc2-201ENSMUST00000014089 2514 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Rfx3P48381 Slc45a1-201ENSMUST00000037827 3387 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Rfx3P48381 Eif5-201ENSMUST00000050993 1969 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Rfx3P48381 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Rfx3P48381 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Rfx3P48381 Camk2d-206ENSMUST00000106402 4180 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Rfx3P48381 Celf4-203ENSMUST00000223704 2492 ntAPPRIS ALT1 BASIC12.79□□□□□ -0.36
Rfx3P48381 Atg16l1-201ENSMUST00000027512 3130 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Rfx3P48381 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Rfx3P48381 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
Rfx3P48381 Gm15427-201ENSMUST00000117288 531 ntBASIC12.79□□□□□ -0.36
Rfx3P48381 Gm14042-201ENSMUST00000120139 833 ntBASIC12.79□□□□□ -0.36
Rfx3P48381 Rpl18-ps1-201ENSMUST00000121555 525 ntBASIC12.79□□□□□ -0.36
Rfx3P48381 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC12.79□□□□□ -0.36
Rfx3P48381 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC12.79□□□□□ -0.36
Rfx3P48381 Frmd5-213ENSMUST00000212518 922 ntTSL 5 BASIC12.79□□□□□ -0.36
Rfx3P48381 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC12.79□□□□□ -0.36
Rfx3P48381 BC031181-201ENSMUST00000040284 1047 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Rfx3P48381 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Rfx3P48381 Olfr520-201ENSMUST00000098264 951 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Rfx3P48381 Slc25a18-201ENSMUST00000112682 1911 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Rfx3P48381 Srp72-202ENSMUST00000120550 2297 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Rfx3P48381 Dnm1-203ENSMUST00000113350 3258 ntAPPRIS ALT1 TSL 5 BASIC12.79□□□□□ -0.36
Rfx3P48381 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC12.79□□□□□ -0.36
Rfx3P48381 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Rfx3P48381 Mavs-202ENSMUST00000110199 3057 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Rfx3P48381 Caprin1-201ENSMUST00000028607 6169 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Rfx3P48381 Ubxn4-201ENSMUST00000027592 4113 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Rfx3P48381 Atp4b-201ENSMUST00000033826 1378 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Rfx3P48381 Camta2-203ENSMUST00000108544 4632 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Rfx3P48381 Grin2c-201ENSMUST00000003351 4279 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Rfx3P48381 Ankra2-208ENSMUST00000226100 1476 ntBASIC12.78□□□□□ -0.36
Rfx3P48381 Rab11fip2-201ENSMUST00000051996 4482 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Rfx3P48381 Iffo2-201ENSMUST00000040023 5227 ntAPPRIS P3 TSL 5 BASIC12.78□□□□□ -0.36
Rfx3P48381 Rnase10-202ENSMUST00000164632 1521 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Rfx3P48381 Amz1-201ENSMUST00000060918 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Rfx3P48381 Kif1c-204ENSMUST00000137119 6596 ntAPPRIS P2 TSL 5 BASIC12.78□□□□□ -0.36
Rfx3P48381 Tdg-208ENSMUST00000151390 3502 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Rfx3P48381 Mcur1-201ENSMUST00000021800 4339 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 27.8 ms