Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Pou2f2-209ENSMUST00000175774 7047 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Cdx1P18111 Fbxl4-201ENSMUST00000039234 2546 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Cdx1P18111 Rgs12-205ENSMUST00000114283 2628 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
Cdx1P18111 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Cdx1P18111 Bcas3-201ENSMUST00000074875 2814 ntAPPRIS P3 TSL 5 BASIC11.48□□□□□ -0.57
Cdx1P18111 Gzf1-201ENSMUST00000028928 4232 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Cdx1P18111 Mcf2l-207ENSMUST00000110876 5253 ntAPPRIS P2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Cdx1P18111 Phldb1-213ENSMUST00000144251 3589 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Cdx1P18111 Nlrp6-204ENSMUST00000184560 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Cdx1P18111 Gm5639-201ENSMUST00000122305 2403 ntBASIC11.47□□□□□ -0.57
Cdx1P18111 Krit1-211ENSMUST00000200386 2343 ntTSL 5 BASIC11.47□□□□□ -0.57
Cdx1P18111 Tmem215-202ENSMUST00000179526 2276 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Cdx1P18111 Chrnb1-201ENSMUST00000045971 2155 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Cdx1P18111 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Cdx1P18111 Ubqln5-201ENSMUST00000053743 1915 ntAPPRIS P1 BASIC11.47□□□□□ -0.57
Cdx1P18111 Tubb3-201ENSMUST00000071134 1868 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Cdx1P18111 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC11.47□□□□□ -0.57
Cdx1P18111 Gsdmd-201ENSMUST00000023238 1776 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Cdx1P18111 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC11.47□□□□□ -0.57
Cdx1P18111 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Cdx1P18111 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
Cdx1P18111 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC11.47□□□□□ -0.57
Cdx1P18111 Pdlim4-202ENSMUST00000093109 962 ntTSL 5 BASIC11.47□□□□□ -0.57
Cdx1P18111 Phldb1-218ENSMUST00000156918 3485 ntTSL 5 BASIC11.47□□□□□ -0.57
Cdx1P18111 Olfr607-202ENSMUST00000214347 5706 ntAPPRIS P5 TSL 5 BASIC11.47□□□□□ -0.57
Cdx1P18111 Ap2a1-204ENSMUST00000167930 3376 ntTSL 5 BASIC11.47□□□□□ -0.57
Cdx1P18111 Pax2-201ENSMUST00000004340 3095 ntTSL 5 BASIC11.47□□□□□ -0.57
Cdx1P18111 Srl-201ENSMUST00000023161 5000 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Cdx1P18111 Syt1-202ENSMUST00000105276 4820 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Cdx1P18111 Foxred2-202ENSMUST00000117725 4347 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Cdx1P18111 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Cdx1P18111 Nxph1-201ENSMUST00000060369 2578 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Cdx1P18111 Cox19-201ENSMUST00000049630 2461 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Cdx1P18111 Myc-205ENSMUST00000161976 2338 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Cdx1P18111 Myc-201ENSMUST00000022971 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Cdx1P18111 Cmip-201ENSMUST00000095172 2276 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Cdx1P18111 Gpsm1-204ENSMUST00000114134 2043 ntTSL 3 BASIC11.47□□□□□ -0.57
Cdx1P18111 Trim32-202ENSMUST00000107366 3191 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Cdx1P18111 Kmt5b-205ENSMUST00000113972 4159 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.57
Cdx1P18111 Kmt5b-207ENSMUST00000113974 4150 ntAPPRIS P3 TSL 5 BASIC11.46□□□□□ -0.57
Cdx1P18111 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Cdx1P18111 Ifi47-201ENSMUST00000046704 1690 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Cdx1P18111 Aco1-201ENSMUST00000102973 3832 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Cdx1P18111 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Cdx1P18111 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Cdx1P18111 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Cdx1P18111 Gm26882-201ENSMUST00000181611 1537 ntTSL 5 BASIC11.46□□□□□ -0.57
Cdx1P18111 Rubcn-204ENSMUST00000119810 3371 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.57
Cdx1P18111 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Cdx1P18111 Gstt2-201ENSMUST00000038257 1370 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Cdx1P18111 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC11.46□□□□□ -0.57
Cdx1P18111 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Cdx1P18111 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Cdx1P18111 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC11.46□□□□□ -0.57
Cdx1P18111 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Cdx1P18111 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.57
Cdx1P18111 Mymx-202ENSMUST00000169137 616 ntAPPRIS P4 TSL 2 BASIC11.46□□□□□ -0.57
Cdx1P18111 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC11.46□□□□□ -0.57
Cdx1P18111 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC11.46□□□□□ -0.57
Cdx1P18111 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Cdx1P18111 Mir6404-201ENSMUST00000183699 94 ntBASIC11.46□□□□□ -0.57
Cdx1P18111 AC084391.1-201ENSMUST00000200651 141 ntBASIC11.46□□□□□ -0.57
Cdx1P18111 Cela3a-201ENSMUST00000024200 958 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
Cdx1P18111 1700021F07Rik-201ENSMUST00000029023 646 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Cdx1P18111 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Cdx1P18111 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC11.46□□□□□ -0.57
Cdx1P18111 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC11.46□□□□□ -0.57
Cdx1P18111 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Cdx1P18111 Scara5-201ENSMUST00000022610 3794 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Cdx1P18111 Rhot1-204ENSMUST00000092857 3687 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.57
Cdx1P18111 Gga3-202ENSMUST00000106508 3582 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.58
Cdx1P18111 Pck2-205ENSMUST00000226352 2784 ntBASIC11.46□□□□□ -0.58
Cdx1P18111 Arfip1-201ENSMUST00000098990 2799 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
Cdx1P18111 Nup62cl-201ENSMUST00000101212 1996 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Cdx1P18111 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
Cdx1P18111 Rasl12-202ENSMUST00000165682 1903 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
Cdx1P18111 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.58
Cdx1P18111 Gabrg3-202ENSMUST00000068911 9767 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Cdx1P18111 Gm11992-201ENSMUST00000043285 2400 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Cdx1P18111 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC11.46□□□□□ -0.58
Cdx1P18111 Plch2-210ENSMUST00000176194 5619 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.58
Cdx1P18111 Cacna1g-202ENSMUST00000100561 8125 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.58
Cdx1P18111 Sipa1-204ENSMUST00000169854 3583 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.58
Cdx1P18111 Spata5-209ENSMUST00000198968 2916 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.58
Cdx1P18111 9930104L06Rik-201ENSMUST00000094769 2911 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
Cdx1P18111 Lysmd4-201ENSMUST00000058771 2898 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.58
Cdx1P18111 Tacc3-202ENSMUST00000079534 2899 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.58
Cdx1P18111 Nrap-201ENSMUST00000040711 5334 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdx1P18111 Dsp-202ENSMUST00000127906 7761 ntAPPRIS ALT2 TSL 5 BASIC11.45□□□□□ -0.58
Cdx1P18111 Popdc2-201ENSMUST00000023494 2169 ntAPPRIS P4 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdx1P18111 Diaph1-204ENSMUST00000115631 5741 ntAPPRIS ALT2 TSL 5 BASIC11.45□□□□□ -0.58
Cdx1P18111 Olah-202ENSMUST00000115087 1479 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdx1P18111 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdx1P18111 Il11-201ENSMUST00000094892 1949 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdx1P18111 Caprin1-201ENSMUST00000028607 6169 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdx1P18111 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdx1P18111 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC11.45□□□□□ -0.58
Cdx1P18111 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC11.45□□□□□ -0.58
Cdx1P18111 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Cdx1P18111 Gm14494-201ENSMUST00000118786 435 ntBASIC11.45□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 51.7 ms