Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Ppp1r14d-201ENSMUST00000076084 787 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Col3a1P08121 Kir3dl1-202ENSMUST00000113105 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Col3a1P08121 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Col3a1P08121 Zkscan14-203ENSMUST00000198959 2243 ntBASIC16.71■□□□□ 0.27
Col3a1P08121 Zfp853-201ENSMUST00000180336 1956 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
Col3a1P08121 Slc25a54-201ENSMUST00000029478 1673 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
Col3a1P08121 Cep44-201ENSMUST00000040330 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
Col3a1P08121 1700029H14Rik-205ENSMUST00000187391 1408 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.26
Col3a1P08121 Apbb1-213ENSMUST00000189265 1429 ntTSL 5 BASIC16.71■□□□□ 0.26
Col3a1P08121 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
Col3a1P08121 Gm4756-202ENSMUST00000208039 2344 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
Col3a1P08121 B4galt3-202ENSMUST00000111313 2098 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col3a1P08121 A930033H14Rik-201ENSMUST00000170048 2969 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col3a1P08121 Cchcr1-201ENSMUST00000045956 2748 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col3a1P08121 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
Col3a1P08121 Pcgf2-201ENSMUST00000018681 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col3a1P08121 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col3a1P08121 Ctsk-201ENSMUST00000015664 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col3a1P08121 Pef1-202ENSMUST00000118199 1915 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
Col3a1P08121 St6galnac6-209ENSMUST00000131229 1013 ntTSL 2 BASIC16.7■□□□□ 0.26
Col3a1P08121 Gm14455-201ENSMUST00000138288 2146 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Col3a1P08121 Tmem52-204ENSMUST00000178188 908 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
Col3a1P08121 Tmem52-205ENSMUST00000178238 968 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col3a1P08121 Gm8652-201ENSMUST00000181363 964 ntBASIC16.7■□□□□ 0.26
Col3a1P08121 C430014B12Rik-201ENSMUST00000181720 1001 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Col3a1P08121 Mir6420-201ENSMUST00000185032 102 ntBASIC16.7■□□□□ 0.26
Col3a1P08121 Gm7561-201ENSMUST00000211203 886 ntBASIC16.7■□□□□ 0.26
Col3a1P08121 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col3a1P08121 4930518P08Rik-201ENSMUST00000221281 1187 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Col3a1P08121 1700127F24Rik-201ENSMUST00000221685 604 ntBASIC16.7■□□□□ 0.26
Col3a1P08121 Camkmt-201ENSMUST00000095188 972 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col3a1P08121 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col3a1P08121 Gnb2-202ENSMUST00000111020 1470 ntTSL 5 BASIC16.7■□□□□ 0.26
Col3a1P08121 B230319C09Rik-201ENSMUST00000063376 1689 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Col3a1P08121 Phgdh-201ENSMUST00000065793 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col3a1P08121 Pex1-202ENSMUST00000121291 4555 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
Col3a1P08121 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
Col3a1P08121 2900005J15Rik-202ENSMUST00000171190 2025 ntBASIC16.7■□□□□ 0.26
Col3a1P08121 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col3a1P08121 Pls1-201ENSMUST00000093800 3704 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col3a1P08121 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.26
Col3a1P08121 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col3a1P08121 Aldh3b1-201ENSMUST00000051803 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col3a1P08121 Mfn2-202ENSMUST00000105714 2427 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Col3a1P08121 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col3a1P08121 Galnt14-201ENSMUST00000024858 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col3a1P08121 Sirt3-201ENSMUST00000026559 1461 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col3a1P08121 Ppp1r1b-206ENSMUST00000150762 1801 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Col3a1P08121 Clcf1-201ENSMUST00000046506 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col3a1P08121 Gm11425-201ENSMUST00000119608 498 ntBASIC16.69■□□□□ 0.26
Col3a1P08121 Rpl12-203ENSMUST00000126610 1242 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col3a1P08121 Bik-201ENSMUST00000016902 943 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col3a1P08121 Gm44799-201ENSMUST00000207639 1202 ntBASIC16.69■□□□□ 0.26
Col3a1P08121 Gm9396-201ENSMUST00000076703 567 ntBASIC16.69■□□□□ 0.26
Col3a1P08121 Tmem38b-201ENSMUST00000030127 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col3a1P08121 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col3a1P08121 Gm9816-201ENSMUST00000122292 1414 ntBASIC16.69■□□□□ 0.26
Col3a1P08121 Ldhal6b-201ENSMUST00000189788 1445 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
Col3a1P08121 Sgce-204ENSMUST00000115577 1776 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Col3a1P08121 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col3a1P08121 Jade1-203ENSMUST00000168086 4790 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Col3a1P08121 Tmem185b-202ENSMUST00000183952 2824 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
Col3a1P08121 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col3a1P08121 Tal1-201ENSMUST00000030489 4213 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col3a1P08121 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col3a1P08121 Hnrnpa1-201ENSMUST00000036004 1918 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Col3a1P08121 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col3a1P08121 Nop58-201ENSMUST00000027174 1713 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
Col3a1P08121 Ldha-214ENSMUST00000210815 1535 ntTSL 5 BASIC16.69■□□□□ 0.26
Col3a1P08121 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Col3a1P08121 Dhdds-204ENSMUST00000105887 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col3a1P08121 Gm12020-201ENSMUST00000119030 2042 ntBASIC16.69■□□□□ 0.26
Col3a1P08121 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col3a1P08121 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col3a1P08121 Zfp36-202ENSMUST00000209061 2465 ntAPPRIS ALT2 BASIC16.69■□□□□ 0.26
Col3a1P08121 Xylt2-201ENSMUST00000116349 3442 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col3a1P08121 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col3a1P08121 Traf1-201ENSMUST00000028234 2069 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Col3a1P08121 Plekhb1-201ENSMUST00000079176 2079 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col3a1P08121 Zbtb32-201ENSMUST00000108150 854 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Col3a1P08121 Far2os1-201ENSMUST00000162391 555 ntTSL 2 BASIC16.68■□□□□ 0.26
Col3a1P08121 Gm29127-201ENSMUST00000188304 517 ntBASIC16.68■□□□□ 0.26
Col3a1P08121 Gm5069-202ENSMUST00000192714 1011 ntBASIC16.68■□□□□ 0.26
Col3a1P08121 AC159474.1-201ENSMUST00000218454 374 ntTSL 3 BASIC16.68■□□□□ 0.26
Col3a1P08121 Gps2-201ENSMUST00000057884 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col3a1P08121 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col3a1P08121 Igsf5-202ENSMUST00000081093 1554 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Col3a1P08121 Rspry1-207ENSMUST00000212729 2800 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Col3a1P08121 Gm15850-201ENSMUST00000134998 2049 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Col3a1P08121 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col3a1P08121 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col3a1P08121 Enpp1-203ENSMUST00000135846 2721 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col3a1P08121 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col3a1P08121 Pias3-203ENSMUST00000107077 2695 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Col3a1P08121 Asb2-201ENSMUST00000021617 2690 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col3a1P08121 Ociad2-205ENSMUST00000201908 2378 ntTSL 2 BASIC16.68■□□□□ 0.26
Col3a1P08121 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Col3a1P08121 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC16.68■□□□□ 0.26
Col3a1P08121 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Col3a1P08121 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC16.68■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 37.2 ms