Protein–RNA interactions for Protein: O89116

Vti1a, Vesicle transport through interaction with t-SNAREs homolog 1A, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1aO89116 Rdm1-201ENSMUST00000010506 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Vti1aO89116 Stra8-202ENSMUST00000114997 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Vti1aO89116 1700110K17Rik-202ENSMUST00000156511 927 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Vti1aO89116 Gm9522-201ENSMUST00000182394 926 ntBASIC15.27■□□□□ 0.04
Vti1aO89116 Sar1b-201ENSMUST00000020653 1201 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Vti1aO89116 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC15.27■□□□□ 0.04
Vti1aO89116 0610005C13Rik-201ENSMUST00000209416 856 ntTSL 5 BASIC15.27■□□□□ 0.04
Vti1aO89116 Letm2-213ENSMUST00000211422 738 ntTSL 5 BASIC15.27■□□□□ 0.04
Vti1aO89116 Gm45453-201ENSMUST00000211758 853 ntBASIC15.27■□□□□ 0.04
Vti1aO89116 Tspan3-203ENSMUST00000215906 842 ntTSL 3 BASIC15.27■□□□□ 0.04
Vti1aO89116 AC087891.2-201ENSMUST00000219293 658 ntTSL 5 BASIC15.27■□□□□ 0.04
Vti1aO89116 AC121804.3-201ENSMUST00000223420 295 ntBASIC15.27■□□□□ 0.04
Vti1aO89116 AC154239.3-201ENSMUST00000226933 674 ntBASIC15.27■□□□□ 0.04
Vti1aO89116 AC132467.2-202ENSMUST00000227726 559 ntBASIC15.27■□□□□ 0.04
Vti1aO89116 Epo-201ENSMUST00000031723 715 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Vti1aO89116 Nup37-201ENSMUST00000052355 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Vti1aO89116 Fthl17c-201ENSMUST00000075792 850 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
Vti1aO89116 Ism2-202ENSMUST00000125733 2526 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
Vti1aO89116 Slc38a7-201ENSMUST00000040481 3333 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Vti1aO89116 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC15.27■□□□□ 0.03
Vti1aO89116 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
Vti1aO89116 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC15.27■□□□□ 0.03
Vti1aO89116 Gm26882-201ENSMUST00000181611 1537 ntTSL 5 BASIC15.27■□□□□ 0.03
Vti1aO89116 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Vti1aO89116 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Vti1aO89116 Pdk2-201ENSMUST00000038431 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Vti1aO89116 Ppia-206ENSMUST00000213200 1450 ntTSL 5 BASIC15.27■□□□□ 0.03
Vti1aO89116 Fstl5-201ENSMUST00000038364 5107 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Vti1aO89116 Pigv-201ENSMUST00000062118 3979 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Vti1aO89116 Nfe2l1-201ENSMUST00000081775 4654 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Vti1aO89116 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Vti1aO89116 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Vti1aO89116 Cant1-201ENSMUST00000017620 4182 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Vti1aO89116 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Vti1aO89116 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Vti1aO89116 Rwdd2a-201ENSMUST00000034988 1355 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Vti1aO89116 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Vti1aO89116 Slc41a1-201ENSMUST00000086559 4697 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Vti1aO89116 Arpc4-203ENSMUST00000203578 1323 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Vti1aO89116 Gm10406-202ENSMUST00000170738 1955 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Vti1aO89116 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Vti1aO89116 Ralgds-201ENSMUST00000028170 3590 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Vti1aO89116 Pbx3-201ENSMUST00000040638 2587 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Vti1aO89116 Papd5-201ENSMUST00000066748 4489 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Vti1aO89116 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC15.26■□□□□ 0.03
Vti1aO89116 Prrx2-202ENSMUST00000113592 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Vti1aO89116 A530058N18Rik-202ENSMUST00000134129 411 ntTSL 3 BASIC15.26■□□□□ 0.03
Vti1aO89116 Gm11535-201ENSMUST00000145517 778 ntTSL 3 BASIC15.26■□□□□ 0.03
Vti1aO89116 Gm12091-201ENSMUST00000146791 830 ntBASIC15.26■□□□□ 0.03
Vti1aO89116 Atp6v1f-203ENSMUST00000149646 806 ntTSL 5 BASIC15.26■□□□□ 0.03
Vti1aO89116 BC023719-201ENSMUST00000174728 978 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Vti1aO89116 Lamtor1-202ENSMUST00000193465 661 ntTSL 5 BASIC15.26■□□□□ 0.03
Vti1aO89116 Gm18187-201ENSMUST00000196476 984 ntBASIC15.26■□□□□ 0.03
Vti1aO89116 Gm42612-201ENSMUST00000197986 623 ntBASIC15.26■□□□□ 0.03
Vti1aO89116 Gm43170-201ENSMUST00000199827 612 ntBASIC15.26■□□□□ 0.03
Vti1aO89116 Gm45195-201ENSMUST00000205597 1008 ntBASIC15.26■□□□□ 0.03
Vti1aO89116 Coa6-202ENSMUST00000211868 564 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Vti1aO89116 Gm9229-201ENSMUST00000222777 126 ntBASIC15.26■□□□□ 0.03
Vti1aO89116 Rps15-201ENSMUST00000062674 572 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Vti1aO89116 Rgs6-203ENSMUST00000185665 2201 ntAPPRIS P4 TSL 5 BASIC15.26■□□□□ 0.03
Vti1aO89116 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Vti1aO89116 Lipo3-202ENSMUST00000112508 2839 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Vti1aO89116 Gspt2-201ENSMUST00000096368 2491 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Vti1aO89116 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Vti1aO89116 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Vti1aO89116 Ltbp4-201ENSMUST00000038618 5386 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Vti1aO89116 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Vti1aO89116 Brix1-201ENSMUST00000022855 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Vti1aO89116 B130055M24Rik-201ENSMUST00000144796 1778 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Vti1aO89116 Hif1a-201ENSMUST00000021530 4724 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Vti1aO89116 Ldb3-207ENSMUST00000227819 1499 ntBASIC15.26■□□□□ 0.03
Vti1aO89116 Ncs1-201ENSMUST00000000199 4653 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Vti1aO89116 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Vti1aO89116 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Vti1aO89116 Dap3-207ENSMUST00000173135 1409 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Vti1aO89116 Actl7b-201ENSMUST00000095080 1439 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Vti1aO89116 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Vti1aO89116 Ctnnb1-201ENSMUST00000007130 3623 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Vti1aO89116 Cgn-201ENSMUST00000107272 4963 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Vti1aO89116 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Vti1aO89116 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Vti1aO89116 Mettl7a3-201ENSMUST00000075420 1618 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Vti1aO89116 Tdrd5-201ENSMUST00000121146 3759 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Vti1aO89116 Ap5m1-205ENSMUST00000227431 3757 ntBASIC15.25■□□□□ 0.03
Vti1aO89116 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Vti1aO89116 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC15.25■□□□□ 0.03
Vti1aO89116 Arhgap28-201ENSMUST00000024840 5322 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Vti1aO89116 Wdr73-201ENSMUST00000026816 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Vti1aO89116 Lpar2-202ENSMUST00000164890 5800 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Vti1aO89116 Ubn2-201ENSMUST00000039127 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Vti1aO89116 Gpx3-201ENSMUST00000082430 1594 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Vti1aO89116 Hpse-201ENSMUST00000045617 3117 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Vti1aO89116 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Vti1aO89116 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Vti1aO89116 Gm16091-201ENSMUST00000156664 963 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Vti1aO89116 Gstt1-201ENSMUST00000001713 1037 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Vti1aO89116 4930478K11Rik-201ENSMUST00000181875 715 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Vti1aO89116 Gm15294-202ENSMUST00000182079 366 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
Vti1aO89116 Asb1-205ENSMUST00000188081 1272 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Vti1aO89116 Asb1-206ENSMUST00000188879 1299 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 23.9 ms