Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
Hmgb3O54879 Gm39244-202ENSMUST00000210837 1857 ntTSL 5 BASIC11.73□□□□□ -0.53
Hmgb3O54879 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Hmgb3O54879 Gm5184-201ENSMUST00000220417 1702 ntBASIC11.73□□□□□ -0.53
Hmgb3O54879 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC11.73□□□□□ -0.53
Hmgb3O54879 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Hmgb3O54879 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Hmgb3O54879 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Hmgb3O54879 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
Hmgb3O54879 Sh3bp4-201ENSMUST00000066279 4995 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Hmgb3O54879 Zscan29-205ENSMUST00000163766 3611 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
Hmgb3O54879 Senp5-201ENSMUST00000023457 3498 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Hmgb3O54879 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Hmgb3O54879 Mgat1-202ENSMUST00000101293 2729 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Hmgb3O54879 Zfp335-201ENSMUST00000041361 4587 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hmgb3O54879 Neu4-201ENSMUST00000050890 4511 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hmgb3O54879 Stip1-201ENSMUST00000025918 2173 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hmgb3O54879 Cpeb3-204ENSMUST00000126188 4224 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hmgb3O54879 Spred3-201ENSMUST00000048923 4056 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hmgb3O54879 Acadm-201ENSMUST00000072697 2047 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hmgb3O54879 Gm42872-201ENSMUST00000200026 1967 ntBASIC11.72□□□□□ -0.53
Hmgb3O54879 Adam12-201ENSMUST00000067680 7675 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hmgb3O54879 Ldlrad3-201ENSMUST00000058790 3833 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hmgb3O54879 Foxk1-201ENSMUST00000072837 7439 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hmgb3O54879 Syk-201ENSMUST00000055087 5122 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hmgb3O54879 Tpm1-214ENSMUST00000113701 1677 ntTSL 5 BASIC11.72□□□□□ -0.53
Hmgb3O54879 Wac-201ENSMUST00000074919 3070 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Hmgb3O54879 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hmgb3O54879 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hmgb3O54879 Prkx-202ENSMUST00000114044 2639 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Hmgb3O54879 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hmgb3O54879 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Hmgb3O54879 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC11.72□□□□□ -0.53
Hmgb3O54879 Gm27646-201ENSMUST00000183989 110 ntBASIC11.72□□□□□ -0.53
Hmgb3O54879 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hmgb3O54879 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hmgb3O54879 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Hmgb3O54879 Atp2b2-203ENSMUST00000101045 8877 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hmgb3O54879 Snx22-201ENSMUST00000044711 2543 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hmgb3O54879 Slc39a2-201ENSMUST00000047726 2334 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hmgb3O54879 Vps35-201ENSMUST00000034131 3474 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hmgb3O54879 Map6-205ENSMUST00000207883 3431 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hmgb3O54879 Bbs1-201ENSMUST00000053506 5581 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hmgb3O54879 Cggbp1-201ENSMUST00000067744 4425 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hmgb3O54879 Narfl-204ENSMUST00000134108 2062 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Hmgb3O54879 Ak1-201ENSMUST00000068271 2034 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Hmgb3O54879 Tnk2-201ENSMUST00000115120 2794 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Hmgb3O54879 Hk2-204ENSMUST00000170833 2792 ntTSL 5 BASIC11.72□□□□□ -0.53
Hmgb3O54879 Men1-208ENSMUST00000113504 2663 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hmgb3O54879 Dlk1-205ENSMUST00000109844 1703 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hmgb3O54879 Stk25-201ENSMUST00000027498 4249 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Hmgb3O54879 Hnrnpul1-201ENSMUST00000043765 3354 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Hmgb3O54879 Papd7-201ENSMUST00000044081 3994 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Hmgb3O54879 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Hmgb3O54879 Elmo3-202ENSMUST00000212033 2351 ntTSL 5 BASIC11.71□□□□□ -0.53
Hmgb3O54879 Atg16l1-203ENSMUST00000113190 3102 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Hmgb3O54879 Klf4-201ENSMUST00000107619 3029 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Hmgb3O54879 Grip1-202ENSMUST00000077871 3720 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Hmgb3O54879 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Hmgb3O54879 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Hmgb3O54879 Nek8-201ENSMUST00000017549 2809 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Hmgb3O54879 Vwf-203ENSMUST00000112254 8834 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Hmgb3O54879 4930579G24Rik-201ENSMUST00000029388 1970 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Hmgb3O54879 Rrp1-201ENSMUST00000062678 1984 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Hmgb3O54879 Psmd12-201ENSMUST00000021063 1904 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Hmgb3O54879 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.53
Hmgb3O54879 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Hmgb3O54879 AC108846.1-201ENSMUST00000214531 513 ntBASIC11.71□□□□□ -0.53
Hmgb3O54879 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Hmgb3O54879 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Hmgb3O54879 Coq10b-202ENSMUST00000087617 834 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.53
Hmgb3O54879 Pbrm1-203ENSMUST00000052239 5065 ntAPPRIS ALT1 TSL 5 BASIC11.71□□□□□ -0.53
Hmgb3O54879 Setd5-201ENSMUST00000042889 6755 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Hmgb3O54879 9930014A18Rik-201ENSMUST00000180730 3074 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Hmgb3O54879 P2rx3-201ENSMUST00000028465 1812 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.54
Hmgb3O54879 Arid4b-202ENSMUST00000110533 3020 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Hmgb3O54879 Sipa1l3-215ENSMUST00000183096 7713 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.54
Hmgb3O54879 Sipa1l3-201ENSMUST00000085809 7713 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.54
Hmgb3O54879 Myo15-203ENSMUST00000094135 11715 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.54
Hmgb3O54879 Gm13003-201ENSMUST00000151040 2904 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Hmgb3O54879 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Hmgb3O54879 E430024P14Rik-203ENSMUST00000160545 2833 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Hmgb3O54879 Dusp6-201ENSMUST00000020118 2796 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Hmgb3O54879 Arfip2-206ENSMUST00000131446 3275 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.54
Hmgb3O54879 Keap1-205ENSMUST00000194542 3151 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.54
Hmgb3O54879 Wwtr1-201ENSMUST00000029380 4697 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.54
Hmgb3O54879 Ablim2-201ENSMUST00000054598 3564 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.54
Hmgb3O54879 Gm14451-201ENSMUST00000121581 1542 ntBASIC11.7□□□□□ -0.54
Hmgb3O54879 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Hmgb3O54879 Samd4-201ENSMUST00000022386 4564 ntAPPRIS P4 TSL 1 (best) BASIC11.7□□□□□ -0.54
Hmgb3O54879 E2f3-201ENSMUST00000102948 5097 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Hmgb3O54879 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Hmgb3O54879 Lime1-201ENSMUST00000048077 1959 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Hmgb3O54879 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Hmgb3O54879 Chrnd-202ENSMUST00000186373 2949 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Hmgb3O54879 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Hmgb3O54879 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC11.7□□□□□ -0.54
Hmgb3O54879 Slc39a8-202ENSMUST00000081978 3314 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Hmgb3O54879 Ptpn1-201ENSMUST00000029053 4213 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Hmgb3O54879 Gm10110-201ENSMUST00000081204 1891 ntTSL 5 BASIC11.7□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 42.2 ms