Protein–RNA interactions for Protein: O35627

Nr1i3, Nuclear receptor subfamily 1 group I member 3, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1i3O35627 Wdr45-225ENSMUST00000208443 1172 ntTSL 5 BASIC15.22■□□□□ 0.03
Nr1i3O35627 Gstm1-201ENSMUST00000004140 1289 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nr1i3O35627 Foxp2-207ENSMUST00000115477 6760 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nr1i3O35627 Ska1-201ENSMUST00000040188 2669 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nr1i3O35627 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nr1i3O35627 Aldh3b1-201ENSMUST00000051803 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nr1i3O35627 Dhdds-204ENSMUST00000105887 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nr1i3O35627 Fbxo21-206ENSMUST00000202447 3959 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nr1i3O35627 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
Nr1i3O35627 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nr1i3O35627 Ccdc155-201ENSMUST00000121017 2262 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nr1i3O35627 Zbtb20-203ENSMUST00000114691 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nr1i3O35627 Zfp503-201ENSMUST00000043409 4216 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nr1i3O35627 9330182L06Rik-201ENSMUST00000069538 4688 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nr1i3O35627 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Nr1i3O35627 Cdh7-206ENSMUST00000137092 2681 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Nr1i3O35627 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Nr1i3O35627 Gsdmd-201ENSMUST00000023238 1776 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Nr1i3O35627 Stra8-203ENSMUST00000114999 1455 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Nr1i3O35627 Pik3c2b-201ENSMUST00000077730 7928 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Nr1i3O35627 Fhod3-201ENSMUST00000037097 5408 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Nr1i3O35627 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC15.21■□□□□ 0.03
Nr1i3O35627 Zfp316-202ENSMUST00000161448 6891 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Nr1i3O35627 Abcg8-202ENSMUST00000170725 2415 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Nr1i3O35627 Fam214b-202ENSMUST00000107956 3107 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Nr1i3O35627 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC15.21■□□□□ 0.03
Nr1i3O35627 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC15.21■□□□□ 0.03
Nr1i3O35627 Mmab-203ENSMUST00000123256 1277 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Nr1i3O35627 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Nr1i3O35627 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Nr1i3O35627 2410018L13Rik-205ENSMUST00000149246 3370 ntTSL 2 BASIC15.21■□□□□ 0.03
Nr1i3O35627 Clcf1-201ENSMUST00000046506 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Nr1i3O35627 Specc1-209ENSMUST00000201671 2523 ntTSL 5 BASIC15.21■□□□□ 0.03
Nr1i3O35627 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Nr1i3O35627 Gm15557-201ENSMUST00000109629 1380 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
Nr1i3O35627 Me2-201ENSMUST00000025439 2455 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Nr1i3O35627 Stk16-201ENSMUST00000027401 2876 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Nr1i3O35627 Slc39a3-201ENSMUST00000059551 3680 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Nr1i3O35627 AW209491-202ENSMUST00000178289 2035 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Nr1i3O35627 CT030684.3-201ENSMUST00000227308 2445 ntBASIC15.21■□□□□ 0.02
Nr1i3O35627 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Nr1i3O35627 Tspan11-201ENSMUST00000032501 5188 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Nr1i3O35627 Scube1-205ENSMUST00000171496 7824 ntAPPRIS P3 TSL 5 BASIC15.2■□□□□ 0.02
Nr1i3O35627 Gm13387-202ENSMUST00000131147 2646 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Nr1i3O35627 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Nr1i3O35627 Add3-202ENSMUST00000050096 4488 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Nr1i3O35627 Gm6222-201ENSMUST00000120787 396 ntBASIC15.2■□□□□ 0.02
Nr1i3O35627 Gm11745-201ENSMUST00000121669 448 ntBASIC15.2■□□□□ 0.02
Nr1i3O35627 Pcp2-203ENSMUST00000133459 470 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Nr1i3O35627 Hoxa7-203ENSMUST00000140316 643 ntTSL 3 BASIC15.2■□□□□ 0.02
Nr1i3O35627 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC15.2■□□□□ 0.02
Nr1i3O35627 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Nr1i3O35627 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC15.2■□□□□ 0.02
Nr1i3O35627 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
Nr1i3O35627 Pcp2-201ENSMUST00000004749 495 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Nr1i3O35627 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Nr1i3O35627 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Nr1i3O35627 Elfn2-201ENSMUST00000088592 4846 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Nr1i3O35627 Tle3-215ENSMUST00000162583 4299 ntAPPRIS ALT1 TSL 5 BASIC15.2■□□□□ 0.02
Nr1i3O35627 Ldlrap1-201ENSMUST00000037828 6549 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Nr1i3O35627 Ttc7-201ENSMUST00000041110 4614 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Nr1i3O35627 Fgfr3-210ENSMUST00000169212 4245 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
Nr1i3O35627 Sh3glb1-201ENSMUST00000163279 3961 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Nr1i3O35627 Gm2155-201ENSMUST00000181581 1974 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Nr1i3O35627 Serpinb2-201ENSMUST00000009356 1970 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Nr1i3O35627 Sergef-201ENSMUST00000033127 1465 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Nr1i3O35627 Thnsl2-201ENSMUST00000074241 1821 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Nr1i3O35627 Plxdc1-203ENSMUST00000107565 2439 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Nr1i3O35627 Krt16-201ENSMUST00000007280 1565 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nr1i3O35627 Ror2-201ENSMUST00000021918 3985 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nr1i3O35627 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Nr1i3O35627 Eif4e3-201ENSMUST00000032151 2515 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nr1i3O35627 Shmt1-201ENSMUST00000018744 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nr1i3O35627 Klhdc8b-207ENSMUST00000193286 2956 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nr1i3O35627 Gjb4-202ENSMUST00000106090 1446 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Nr1i3O35627 Fam172a-203ENSMUST00000163257 1436 ntAPPRIS P4 TSL 5 BASIC15.19■□□□□ 0.02
Nr1i3O35627 Gjb4-201ENSMUST00000060419 1445 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nr1i3O35627 Vav1-203ENSMUST00000112870 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nr1i3O35627 Magi1-208ENSMUST00000204347 7929 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nr1i3O35627 Atp2b3-201ENSMUST00000033744 3894 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Nr1i3O35627 Wrap53-201ENSMUST00000048139 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nr1i3O35627 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nr1i3O35627 Sipa1-203ENSMUST00000164304 3614 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nr1i3O35627 Prrxl1-203ENSMUST00000187377 1629 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Nr1i3O35627 Hist1h4d-201ENSMUST00000102968 1138 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
Nr1i3O35627 Tex22-202ENSMUST00000109729 735 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nr1i3O35627 Gm13823-201ENSMUST00000119930 345 ntBASIC15.19■□□□□ 0.02
Nr1i3O35627 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Nr1i3O35627 Gm2445-201ENSMUST00000182798 989 ntBASIC15.19■□□□□ 0.02
Nr1i3O35627 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC15.19■□□□□ 0.02
Nr1i3O35627 5830408C22Rik-201ENSMUST00000210072 1115 ntTSL 5 BASIC15.19■□□□□ 0.02
Nr1i3O35627 Gm30934-201ENSMUST00000215803 815 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Nr1i3O35627 AC155252.2-201ENSMUST00000226946 680 ntBASIC15.19■□□□□ 0.02
Nr1i3O35627 Commd9-201ENSMUST00000028584 1191 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nr1i3O35627 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
Nr1i3O35627 Fam174a-202ENSMUST00000186780 3460 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nr1i3O35627 Mocos-201ENSMUST00000068006 2884 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nr1i3O35627 Ranbp3-201ENSMUST00000002445 2511 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nr1i3O35627 Hp1bp3-204ENSMUST00000105826 3348 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Nr1i3O35627 Gm28539-201ENSMUST00000190050 2982 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 39.9 ms