Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Nacc2-201ENSMUST00000028300 6378 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Ushbp1Q8R370 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Ushbp1Q8R370 Pcsk6-202ENSMUST00000098391 4207 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Ushbp1Q8R370 Hcrtr1-201ENSMUST00000030562 2187 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Ushbp1Q8R370 Ank3-223ENSMUST00000182557 1569 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Ushbp1Q8R370 Dctn1-201ENSMUST00000077407 4118 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Ushbp1Q8R370 Atp2a3-207ENSMUST00000163326 4606 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
Ushbp1Q8R370 Traf1-201ENSMUST00000028234 2069 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
Ushbp1Q8R370 F2r-201ENSMUST00000059193 3336 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Ushbp1Q8R370 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC15.91■□□□□ 0.14
Ushbp1Q8R370 Gm6159-201ENSMUST00000191249 1724 ntBASIC15.91■□□□□ 0.14
Ushbp1Q8R370 Fbxo46-202ENSMUST00000165913 2498 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Ushbp1Q8R370 Tdrp-201ENSMUST00000062613 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Ushbp1Q8R370 Hes2-201ENSMUST00000030782 2521 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Ushbp1Q8R370 Srrm3-204ENSMUST00000144211 3932 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Ushbp1Q8R370 2810408I11Rik-202ENSMUST00000150749 711 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Ushbp1Q8R370 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC15.91■□□□□ 0.14
Ushbp1Q8R370 2410004P03Rik-203ENSMUST00000190691 953 ntTSL 2 BASIC15.91■□□□□ 0.14
Ushbp1Q8R370 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC15.91■□□□□ 0.14
Ushbp1Q8R370 Commd9-201ENSMUST00000028584 1191 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Ushbp1Q8R370 Alkbh6-201ENSMUST00000060834 982 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Ushbp1Q8R370 Gm4559-201ENSMUST00000080669 600 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
Ushbp1Q8R370 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Ushbp1Q8R370 Kpna6-201ENSMUST00000003828 2195 ntAPPRIS ALT1 TSL 5 BASIC15.91■□□□□ 0.14
Ushbp1Q8R370 Scube1-201ENSMUST00000016907 3991 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Ushbp1Q8R370 Rab3a-204ENSMUST00000110093 1442 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Ushbp1Q8R370 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Ushbp1Q8R370 Klf4-201ENSMUST00000107619 3029 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Ushbp1Q8R370 Camk1g-204ENSMUST00000169907 1968 ntTSL 5 BASIC15.91■□□□□ 0.14
Ushbp1Q8R370 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Ushbp1Q8R370 Ccdc157-202ENSMUST00000101626 5153 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
Ushbp1Q8R370 Fam76a-201ENSMUST00000030696 3053 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Ushbp1Q8R370 Meioc-201ENSMUST00000100378 4573 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
Ushbp1Q8R370 Papd5-203ENSMUST00000119033 4624 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Ushbp1Q8R370 Slc8a3-201ENSMUST00000064594 4379 ntAPPRIS ALT1 TSL 5 BASIC15.9■□□□□ 0.14
Ushbp1Q8R370 Mdfic-203ENSMUST00000125326 3635 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Ushbp1Q8R370 Rusc2-207ENSMUST00000131668 5093 ntTSL 5 BASIC15.9■□□□□ 0.14
Ushbp1Q8R370 Gm14127-201ENSMUST00000117906 678 ntBASIC15.9■□□□□ 0.14
Ushbp1Q8R370 Gm13383-201ENSMUST00000131190 1171 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Ushbp1Q8R370 Tmem61-202ENSMUST00000177702 561 ntTSL 5 BASIC15.9■□□□□ 0.14
Ushbp1Q8R370 Gm7730-201ENSMUST00000212486 454 ntBASIC15.9■□□□□ 0.14
Ushbp1Q8R370 Gm32351-201ENSMUST00000220503 438 ntTSL 5 BASIC15.9■□□□□ 0.14
Ushbp1Q8R370 Aip-201ENSMUST00000025767 1261 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Ushbp1Q8R370 Fam162a-201ENSMUST00000004057 635 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Ushbp1Q8R370 Tmod4-201ENSMUST00000005769 1242 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Ushbp1Q8R370 Gpbar1-201ENSMUST00000077985 1075 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
Ushbp1Q8R370 AC124751.1-201ENSMUST00000222716 1408 ntBASIC15.9■□□□□ 0.14
Ushbp1Q8R370 Tap2-201ENSMUST00000025197 3442 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Ushbp1Q8R370 Enpp1-203ENSMUST00000135846 2721 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Ushbp1Q8R370 Adgrg5-205ENSMUST00000166802 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Ushbp1Q8R370 4921504A21Rik-201ENSMUST00000180594 2156 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Ushbp1Q8R370 Rhobtb1-210ENSMUST00000167384 2331 ntTSL 5 BASIC15.9■□□□□ 0.14
Ushbp1Q8R370 Arhgap10-201ENSMUST00000076316 3084 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Ushbp1Q8R370 Tacc1-202ENSMUST00000084512 6471 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Ushbp1Q8R370 Cand2-201ENSMUST00000075995 5474 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Ushbp1Q8R370 Krt20-201ENSMUST00000017743 1927 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Ushbp1Q8R370 Myo9b-203ENSMUST00000170242 7297 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
Ushbp1Q8R370 A930033H14Rik-201ENSMUST00000170048 2969 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Ushbp1Q8R370 Capn7-201ENSMUST00000022451 3648 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Ushbp1Q8R370 Tcf4-253ENSMUST00000202610 1959 ntTSL 5 BASIC15.89■□□□□ 0.13
Ushbp1Q8R370 Ywhaq-201ENSMUST00000049531 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Ushbp1Q8R370 Psmd8-202ENSMUST00000182328 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Ushbp1Q8R370 Pnkd-201ENSMUST00000027370 2937 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Ushbp1Q8R370 Ist1-201ENSMUST00000034164 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Ushbp1Q8R370 Krt71-201ENSMUST00000023710 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Ushbp1Q8R370 Hsd3b7-203ENSMUST00000106272 1725 ntTSL 5 BASIC15.89■□□□□ 0.13
Ushbp1Q8R370 Kpna4-201ENSMUST00000029353 8819 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Ushbp1Q8R370 Fubp1-206ENSMUST00000196739 2526 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Ushbp1Q8R370 Ctnnd2-203ENSMUST00000226119 4111 ntAPPRIS ALT2 BASIC15.89■□□□□ 0.13
Ushbp1Q8R370 Prkcsh-205ENSMUST00000216344 2228 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
Ushbp1Q8R370 Rab9b-201ENSMUST00000058814 3980 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Ushbp1Q8R370 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC15.89■□□□□ 0.13
Ushbp1Q8R370 Erdr1-204ENSMUST00000179483 688 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Ushbp1Q8R370 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
Ushbp1Q8R370 4930573H18Rik-201ENSMUST00000197696 906 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Ushbp1Q8R370 Dimt1-201ENSMUST00000022203 2051 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Ushbp1Q8R370 Gk-201ENSMUST00000026039 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Ushbp1Q8R370 Fzd7-201ENSMUST00000114246 4532 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
Ushbp1Q8R370 Gm9917-201ENSMUST00000180865 5192 ntTSL 3 BASIC15.89■□□□□ 0.13
Ushbp1Q8R370 Cd3d-201ENSMUST00000034602 1617 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Ushbp1Q8R370 Zfp651-201ENSMUST00000093772 6353 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
Ushbp1Q8R370 Arhgap8-205ENSMUST00000168811 1464 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Ushbp1Q8R370 Dclk1-211ENSMUST00000199169 1499 ntTSL 2 BASIC15.89■□□□□ 0.13
Ushbp1Q8R370 Zfp853-201ENSMUST00000180336 1956 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
Ushbp1Q8R370 Rnf167-201ENSMUST00000037534 1833 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Ushbp1Q8R370 Ctu2-201ENSMUST00000116412 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Ushbp1Q8R370 Clcc1-201ENSMUST00000029483 2224 ntAPPRIS P3 TSL 5 BASIC15.88■□□□□ 0.13
Ushbp1Q8R370 Ints3-203ENSMUST00000196530 3778 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Ushbp1Q8R370 Kcnj9-202ENSMUST00000194204 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Ushbp1Q8R370 Adra1b-204ENSMUST00000167574 3047 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Ushbp1Q8R370 Gale-202ENSMUST00000102541 1430 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Ushbp1Q8R370 Prok2-202ENSMUST00000032152 1423 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Ushbp1Q8R370 Ralbp1-201ENSMUST00000024905 3765 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Ushbp1Q8R370 Alkbh2-202ENSMUST00000112279 899 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Ushbp1Q8R370 Hist3h2bb-ps-201ENSMUST00000117558 465 ntBASIC15.88■□□□□ 0.13
Ushbp1Q8R370 Gm11535-201ENSMUST00000145517 778 ntTSL 3 BASIC15.88■□□□□ 0.13
Ushbp1Q8R370 Rab40c-203ENSMUST00000164982 789 ntTSL 5 BASIC15.88■□□□□ 0.13
Ushbp1Q8R370 Lamtor3-201ENSMUST00000168345 1295 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Ushbp1Q8R370 Lamtor1-202ENSMUST00000193465 661 ntTSL 5 BASIC15.88■□□□□ 0.13
Ushbp1Q8R370 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Retrieved 100 of 76,532 protein–RNA pairs in 34.9 ms