Protein–RNA interactions for Protein: Q8C9S8

Atg4a, Cysteine protease ATG4A, mousemouse

Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Atg4aQ8C9S8 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC17.23■□□□□ 0.35
Atg4aQ8C9S8 Gm27680-201ENSMUST00000184192 160 ntBASIC17.23■□□□□ 0.35
Atg4aQ8C9S8 B9d2-203ENSMUST00000205658 995 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Atg4aQ8C9S8 Gm46209-201ENSMUST00000217912 553 ntBASIC17.23■□□□□ 0.35
Atg4aQ8C9S8 AC131690.1-201ENSMUST00000218406 374 ntBASIC17.23■□□□□ 0.35
Atg4aQ8C9S8 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC17.23■□□□□ 0.35
Atg4aQ8C9S8 Lce1d-201ENSMUST00000029524 678 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Atg4aQ8C9S8 Myl3-201ENSMUST00000079784 937 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Atg4aQ8C9S8 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Atg4aQ8C9S8 Kcna5-201ENSMUST00000060972 2862 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Atg4aQ8C9S8 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Atg4aQ8C9S8 Gnb5-202ENSMUST00000213990 1803 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Atg4aQ8C9S8 Raf1-201ENSMUST00000000451 3070 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Atg4aQ8C9S8 Arap3-201ENSMUST00000042944 5224 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Atg4aQ8C9S8 Sept1-202ENSMUST00000106314 1486 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Atg4aQ8C9S8 Cep170b-211ENSMUST00000222711 6566 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Atg4aQ8C9S8 Mon1b-201ENSMUST00000035777 4998 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Atg4aQ8C9S8 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Atg4aQ8C9S8 Cep126-201ENSMUST00000037397 3819 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Atg4aQ8C9S8 Tgif2-202ENSMUST00000081335 2900 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Atg4aQ8C9S8 Slc52a3-204ENSMUST00000109861 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Atg4aQ8C9S8 Gas2l3-207ENSMUST00000220128 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Atg4aQ8C9S8 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Atg4aQ8C9S8 Rab37-201ENSMUST00000021076 2210 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Atg4aQ8C9S8 Dennd1a-201ENSMUST00000102787 4342 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Atg4aQ8C9S8 Ilvbl-201ENSMUST00000105384 2329 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Atg4aQ8C9S8 Slc8a3-203ENSMUST00000182208 3433 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Atg4aQ8C9S8 Gm13055-201ENSMUST00000127875 1961 ntTSL 5 BASIC17.22■□□□□ 0.35
Atg4aQ8C9S8 Sh3bp5-202ENSMUST00000100730 2633 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Atg4aQ8C9S8 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Atg4aQ8C9S8 Rhoj-201ENSMUST00000055390 2350 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Atg4aQ8C9S8 Crybb2-202ENSMUST00000112336 906 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Atg4aQ8C9S8 Mroh1-217ENSMUST00000162319 1244 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Atg4aQ8C9S8 Gm26839-201ENSMUST00000180686 842 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Atg4aQ8C9S8 Gm27321-201ENSMUST00000185021 205 ntBASIC17.22■□□□□ 0.35
Atg4aQ8C9S8 Ighv8-8-201ENSMUST00000192591 358 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
Atg4aQ8C9S8 Ighv1-25-201ENSMUST00000195638 345 ntBASIC17.22■□□□□ 0.35
Atg4aQ8C9S8 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Atg4aQ8C9S8 AC151828.1-201ENSMUST00000219552 661 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Atg4aQ8C9S8 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
Atg4aQ8C9S8 Zswim7-201ENSMUST00000072916 732 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Atg4aQ8C9S8 Cox6b1-201ENSMUST00000075738 618 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Atg4aQ8C9S8 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
Atg4aQ8C9S8 Safb2-201ENSMUST00000075510 3277 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Atg4aQ8C9S8 Rapsn-203ENSMUST00000111446 1458 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Atg4aQ8C9S8 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Atg4aQ8C9S8 Krt36-201ENSMUST00000107416 1671 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Atg4aQ8C9S8 Tbl1x-201ENSMUST00000088217 5234 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Atg4aQ8C9S8 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC17.22■□□□□ 0.35
Atg4aQ8C9S8 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Atg4aQ8C9S8 Zbed4-201ENSMUST00000041297 5425 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Atg4aQ8C9S8 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Atg4aQ8C9S8 Ociad2-204ENSMUST00000200830 2384 ntTSL 3 BASIC17.22■□□□□ 0.35
Atg4aQ8C9S8 Plekha8-202ENSMUST00000119706 6739 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
Atg4aQ8C9S8 Fbxo44-205ENSMUST00000151127 1403 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Atg4aQ8C9S8 Gm15889-202ENSMUST00000212669 2443 ntBASIC17.21■□□□□ 0.35
Atg4aQ8C9S8 Scg2-201ENSMUST00000049972 2515 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
Atg4aQ8C9S8 Arpc1b-201ENSMUST00000085679 3105 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Atg4aQ8C9S8 Adam10-201ENSMUST00000067880 4593 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Atg4aQ8C9S8 Ccnj-202ENSMUST00000119316 3763 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Atg4aQ8C9S8 Ska1-201ENSMUST00000040188 2669 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Atg4aQ8C9S8 Gm37812-201ENSMUST00000195216 2475 ntBASIC17.21■□□□□ 0.35
Atg4aQ8C9S8 Arhgef25-202ENSMUST00000167353 2189 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Atg4aQ8C9S8 Gm8334-201ENSMUST00000112755 1662 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Atg4aQ8C9S8 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Atg4aQ8C9S8 Dap-204ENSMUST00000186425 597 ntTSL 3 BASIC17.21■□□□□ 0.35
Atg4aQ8C9S8 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Atg4aQ8C9S8 Gm37714-201ENSMUST00000194742 342 ntBASIC17.21■□□□□ 0.35
Atg4aQ8C9S8 Osbpl9-202ENSMUST00000084366 3134 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Atg4aQ8C9S8 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Atg4aQ8C9S8 Fam57b-203ENSMUST00000205324 1915 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Atg4aQ8C9S8 Pgr-201ENSMUST00000070463 3068 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Atg4aQ8C9S8 Pgr-202ENSMUST00000098986 3068 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Atg4aQ8C9S8 Tmem181b-ps-203ENSMUST00000188746 1626 ntTSL 5 BASIC17.21■□□□□ 0.35
Atg4aQ8C9S8 Catsper4-204ENSMUST00000169381 1506 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
Atg4aQ8C9S8 Gbgt1-203ENSMUST00000163121 1335 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.34
Atg4aQ8C9S8 Nop9-201ENSMUST00000019441 3694 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Atg4aQ8C9S8 Kyat1-205ENSMUST00000113662 1850 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Atg4aQ8C9S8 Adgrl1-201ENSMUST00000045393 5643 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Atg4aQ8C9S8 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Atg4aQ8C9S8 Lysmd3-201ENSMUST00000049055 2338 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Atg4aQ8C9S8 Plekha1-202ENSMUST00000075181 2301 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Atg4aQ8C9S8 Syngr1-201ENSMUST00000009727 4180 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
Atg4aQ8C9S8 Wnt3a-201ENSMUST00000010044 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Atg4aQ8C9S8 Ash2l-202ENSMUST00000110608 2134 ntTSL 5 BASIC17.2■□□□□ 0.34
Atg4aQ8C9S8 Zfp747-201ENSMUST00000067425 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Atg4aQ8C9S8 Rnf25-201ENSMUST00000027357 1479 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Atg4aQ8C9S8 Cldn14-201ENSMUST00000050962 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Atg4aQ8C9S8 Ints3-203ENSMUST00000196530 3778 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Atg4aQ8C9S8 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Atg4aQ8C9S8 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Atg4aQ8C9S8 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC17.2■□□□□ 0.34
Atg4aQ8C9S8 Gm14268-201ENSMUST00000132465 682 ntTSL 3 BASIC17.2■□□□□ 0.34
Atg4aQ8C9S8 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Atg4aQ8C9S8 Mir6956-201ENSMUST00000183598 62 ntBASIC17.2■□□□□ 0.34
Atg4aQ8C9S8 Gm17837-201ENSMUST00000186435 985 ntBASIC17.2■□□□□ 0.34
Atg4aQ8C9S8 Gm44344-201ENSMUST00000200287 129 ntBASIC17.2■□□□□ 0.34
Atg4aQ8C9S8 Gm18027-201ENSMUST00000218947 619 ntBASIC17.2■□□□□ 0.34
Atg4aQ8C9S8 AC126408.1-201ENSMUST00000225184 523 ntBASIC17.2■□□□□ 0.34
Atg4aQ8C9S8 CT030704.2-201ENSMUST00000228887 494 ntBASIC17.2■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 38.8 ms