Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Letm2-213ENSMUST00000211422 738 ntTSL 5 BASIC19.94■□□□□ 0.78
Usp47Q8BY87 Smim11-201ENSMUST00000063641 517 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Usp47Q8BY87 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC19.94■□□□□ 0.78
Usp47Q8BY87 Mmp14-206ENSMUST00000225641 3238 ntBASIC19.94■□□□□ 0.78
Usp47Q8BY87 Dkk1-201ENSMUST00000025803 2427 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Usp47Q8BY87 Mapk7-202ENSMUST00000101085 3254 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Usp47Q8BY87 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC19.93■□□□□ 0.78
Usp47Q8BY87 Il11ra1-201ENSMUST00000098132 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Usp47Q8BY87 Rimkla-201ENSMUST00000049994 4097 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Usp47Q8BY87 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Usp47Q8BY87 Gnao1-203ENSMUST00000125716 3462 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Usp47Q8BY87 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC19.93■□□□□ 0.78
Usp47Q8BY87 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Usp47Q8BY87 Lipo3-202ENSMUST00000112508 2839 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Usp47Q8BY87 Sh3bp5-201ENSMUST00000091903 2684 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
Usp47Q8BY87 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Usp47Q8BY87 Acox1-201ENSMUST00000066587 3987 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
Usp47Q8BY87 Urm1-201ENSMUST00000091142 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Usp47Q8BY87 Lcmt1-204ENSMUST00000206574 1286 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
Usp47Q8BY87 Tmem179-202ENSMUST00000222836 521 ntTSL 5 BASIC19.93■□□□□ 0.78
Usp47Q8BY87 AC238811.3-201ENSMUST00000225422 709 ntBASIC19.93■□□□□ 0.78
Usp47Q8BY87 Msgn1-201ENSMUST00000049877 613 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
Usp47Q8BY87 Gm15823-201ENSMUST00000064305 670 ntBASIC19.93■□□□□ 0.78
Usp47Q8BY87 Cenpt-201ENSMUST00000040776 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Usp47Q8BY87 R3hcc1-206ENSMUST00000216152 1467 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Usp47Q8BY87 Thap12-201ENSMUST00000033009 3723 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Usp47Q8BY87 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
Usp47Q8BY87 AC168058.1-201ENSMUST00000219521 2282 ntBASIC19.92■□□□□ 0.78
Usp47Q8BY87 Slc35b1-201ENSMUST00000021243 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Usp47Q8BY87 Capn15-205ENSMUST00000212520 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Usp47Q8BY87 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Usp47Q8BY87 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC19.92■□□□□ 0.78
Usp47Q8BY87 Sptlc1-201ENSMUST00000021920 2606 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Usp47Q8BY87 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
Usp47Q8BY87 Arhgap42-201ENSMUST00000093893 6116 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Usp47Q8BY87 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Usp47Q8BY87 Ckmt2-201ENSMUST00000022122 1486 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Usp47Q8BY87 AC154527.2-201ENSMUST00000225256 1466 ntBASIC19.92■□□□□ 0.78
Usp47Q8BY87 Rab1a-202ENSMUST00000109601 1200 ntTSL 5 BASIC19.92■□□□□ 0.78
Usp47Q8BY87 Rab40c-203ENSMUST00000164982 789 ntTSL 5 BASIC19.92■□□□□ 0.78
Usp47Q8BY87 Gm43438-201ENSMUST00000198133 379 ntBASIC19.92■□□□□ 0.78
Usp47Q8BY87 AC140375.2-201ENSMUST00000225283 584 ntBASIC19.92■□□□□ 0.78
Usp47Q8BY87 Phgr1-201ENSMUST00000061360 538 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
Usp47Q8BY87 H1fnt-201ENSMUST00000060855 1326 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
Usp47Q8BY87 Slc35f1-201ENSMUST00000105473 4941 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Usp47Q8BY87 Gm16685-201ENSMUST00000181286 1592 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Usp47Q8BY87 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Usp47Q8BY87 Irx3os-201ENSMUST00000062522 2988 ntTSL 5 BASIC19.91■□□□□ 0.78
Usp47Q8BY87 Pls1-201ENSMUST00000093800 3704 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Usp47Q8BY87 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
Usp47Q8BY87 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Usp47Q8BY87 Il11-201ENSMUST00000094892 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Usp47Q8BY87 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Usp47Q8BY87 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Usp47Q8BY87 Pdpn-202ENSMUST00000119654 762 ntAPPRIS ALT2 TSL 3 BASIC19.91■□□□□ 0.78
Usp47Q8BY87 Snap47-202ENSMUST00000120940 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Usp47Q8BY87 Gm23984-201ENSMUST00000157139 203 ntBASIC19.91■□□□□ 0.78
Usp47Q8BY87 Fbxw4-209ENSMUST00000162433 789 ntTSL 3 BASIC19.91■□□□□ 0.78
Usp47Q8BY87 Tnfrsf12a-202ENSMUST00000167059 858 ntTSL 2 BASIC19.91■□□□□ 0.78
Usp47Q8BY87 Gm26600-201ENSMUST00000181637 1256 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Usp47Q8BY87 Gm19220-201ENSMUST00000222682 803 ntBASIC19.91■□□□□ 0.78
Usp47Q8BY87 Tnfrsf12a-201ENSMUST00000024698 963 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Usp47Q8BY87 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Usp47Q8BY87 Otop2-201ENSMUST00000055490 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Usp47Q8BY87 C130080G10Rik-203ENSMUST00000154140 1564 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Usp47Q8BY87 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Usp47Q8BY87 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Usp47Q8BY87 Adal-204ENSMUST00000110665 2356 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Usp47Q8BY87 Aldh3b1-201ENSMUST00000051803 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Usp47Q8BY87 Nt5c2-202ENSMUST00000168536 3769 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Usp47Q8BY87 Irak1-206ENSMUST00000114354 3835 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Usp47Q8BY87 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
Usp47Q8BY87 Dctn1-201ENSMUST00000077407 4118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Usp47Q8BY87 Ankrd50-201ENSMUST00000094300 1944 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Usp47Q8BY87 Fam122b-203ENSMUST00000114841 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp47Q8BY87 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp47Q8BY87 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Usp47Q8BY87 Ppt2-209ENSMUST00000171121 1710 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
Usp47Q8BY87 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp47Q8BY87 Cobl-203ENSMUST00000109651 5541 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp47Q8BY87 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
Usp47Q8BY87 Acox3-204ENSMUST00000114238 2825 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp47Q8BY87 Tmem185b-202ENSMUST00000183952 2824 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
Usp47Q8BY87 Gm15678-201ENSMUST00000117573 960 ntBASIC19.9■□□□□ 0.78
Usp47Q8BY87 Poc1a-205ENSMUST00000191434 1242 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp47Q8BY87 AC151971.1-201ENSMUST00000217329 993 ntTSL 5 BASIC19.9■□□□□ 0.78
Usp47Q8BY87 Olfr554-201ENSMUST00000098221 954 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
Usp47Q8BY87 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp47Q8BY87 Kcnj9-202ENSMUST00000194204 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp47Q8BY87 Csad-201ENSMUST00000023805 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp47Q8BY87 Col9a2-201ENSMUST00000030372 2924 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp47Q8BY87 Six1-201ENSMUST00000050029 3316 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp47Q8BY87 Palm-201ENSMUST00000046945 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp47Q8BY87 Ctgf-201ENSMUST00000020171 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp47Q8BY87 Tspan32-206ENSMUST00000105925 1376 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Usp47Q8BY87 Mus81-202ENSMUST00000124334 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp47Q8BY87 Tmtc3-202ENSMUST00000099318 2794 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp47Q8BY87 Nt5c2-203ENSMUST00000172239 3148 ntTSL 5 BASIC19.9■□□□□ 0.78
Usp47Q8BY87 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp47Q8BY87 Nyap1-201ENSMUST00000061789 3912 ntAPPRIS P3 TSL 5 BASIC19.9■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 51.5 ms