Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Vopp1-202ENSMUST00000127485 2908 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Trim56Q80VI1 Bbs7-203ENSMUST00000108156 2687 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim56Q80VI1 Galnt2-201ENSMUST00000034458 4113 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim56Q80VI1 Dkk1-201ENSMUST00000025803 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim56Q80VI1 Ddb2-201ENSMUST00000028696 1557 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim56Q80VI1 Coil-202ENSMUST00000107898 3120 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
Trim56Q80VI1 Gm15850-201ENSMUST00000134998 2049 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Trim56Q80VI1 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC16.72■□□□□ 0.27
Trim56Q80VI1 Me2-201ENSMUST00000025439 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim56Q80VI1 Emilin3-201ENSMUST00000057169 3547 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim56Q80VI1 Plcb3-201ENSMUST00000025912 4201 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim56Q80VI1 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim56Q80VI1 Lcn5-202ENSMUST00000100312 660 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim56Q80VI1 Car4-201ENSMUST00000103194 1256 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim56Q80VI1 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Trim56Q80VI1 Gm9522-201ENSMUST00000182394 926 ntBASIC16.72■□□□□ 0.27
Trim56Q80VI1 Gm26953-206ENSMUST00000212840 619 ntTSL 5 BASIC16.72■□□□□ 0.27
Trim56Q80VI1 Mrpl36-201ENSMUST00000022098 923 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim56Q80VI1 S100a13-201ENSMUST00000048138 715 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim56Q80VI1 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim56Q80VI1 Sh2b1-204ENSMUST00000205497 2854 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim56Q80VI1 Nt5c2-203ENSMUST00000172239 3148 ntTSL 5 BASIC16.72■□□□□ 0.27
Trim56Q80VI1 Slc39a8-202ENSMUST00000081978 3314 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim56Q80VI1 Il2rb-202ENSMUST00000163494 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim56Q80VI1 Ckmt1-202ENSMUST00000078222 1518 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim56Q80VI1 Cdt1-201ENSMUST00000006760 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim56Q80VI1 Cbln4-201ENSMUST00000087950 2902 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim56Q80VI1 Grik5-201ENSMUST00000003468 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim56Q80VI1 Gm27177-203ENSMUST00000184034 1911 ntTSL 5 BASIC16.71■□□□□ 0.27
Trim56Q80VI1 B9d1-201ENSMUST00000102657 817 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim56Q80VI1 Gm15393-201ENSMUST00000120499 219 ntBASIC16.71■□□□□ 0.27
Trim56Q80VI1 Sf3a2-204ENSMUST00000151928 781 ntTSL 5 BASIC16.71■□□□□ 0.27
Trim56Q80VI1 Gm24694-201ENSMUST00000180054 110 ntBASIC16.71■□□□□ 0.27
Trim56Q80VI1 4833428L15Rik-201ENSMUST00000181230 1259 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Trim56Q80VI1 Gm27663-201ENSMUST00000184839 110 ntBASIC16.71■□□□□ 0.27
Trim56Q80VI1 Gm21470-201ENSMUST00000187680 696 ntBASIC16.71■□□□□ 0.27
Trim56Q80VI1 1700028J19Rik-203ENSMUST00000206686 1166 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim56Q80VI1 Tmem253-203ENSMUST00000227295 704 ntAPPRIS ALT2 BASIC16.71■□□□□ 0.27
Trim56Q80VI1 Prss38-201ENSMUST00000061481 1243 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim56Q80VI1 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim56Q80VI1 Nes-203ENSMUST00000160694 5958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim56Q80VI1 P2ry2-201ENSMUST00000037540 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim56Q80VI1 Phgdh-201ENSMUST00000065793 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim56Q80VI1 B4galt3-202ENSMUST00000111313 2098 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim56Q80VI1 Abl2-201ENSMUST00000027888 3549 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim56Q80VI1 Sorbs3-204ENSMUST00000227929 2460 ntBASIC16.71■□□□□ 0.26
Trim56Q80VI1 Syvn1-201ENSMUST00000025723 2780 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.26
Trim56Q80VI1 Usp32-202ENSMUST00000108075 7053 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.26
Trim56Q80VI1 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
Trim56Q80VI1 Lrrc32-203ENSMUST00000205956 4576 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
Trim56Q80VI1 Tor1aip2-205ENSMUST00000111757 6118 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trim56Q80VI1 Chit1-201ENSMUST00000086475 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trim56Q80VI1 Ntf3-201ENSMUST00000050484 1483 ntAPPRIS P3 TSL 2 BASIC16.7■□□□□ 0.26
Trim56Q80VI1 Rdm1-201ENSMUST00000010506 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trim56Q80VI1 Gm12585-201ENSMUST00000117307 290 ntBASIC16.7■□□□□ 0.26
Trim56Q80VI1 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Trim56Q80VI1 Map2k3os-201ENSMUST00000123544 1291 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Trim56Q80VI1 Pax8-208ENSMUST00000153601 1226 ntTSL 5 BASIC16.7■□□□□ 0.26
Trim56Q80VI1 Gm16215-201ENSMUST00000161990 637 ntBASIC16.7■□□□□ 0.26
Trim56Q80VI1 Gm8584-201ENSMUST00000171982 758 ntBASIC16.7■□□□□ 0.26
Trim56Q80VI1 Gm27437-201ENSMUST00000183429 107 ntBASIC16.7■□□□□ 0.26
Trim56Q80VI1 Bpnt1-205ENSMUST00000210277 1226 ntTSL 5 BASIC16.7■□□□□ 0.26
Trim56Q80VI1 Gm18027-201ENSMUST00000218947 619 ntBASIC16.7■□□□□ 0.26
Trim56Q80VI1 AC154846.1-201ENSMUST00000226278 862 ntBASIC16.7■□□□□ 0.26
Trim56Q80VI1 Pgbd5-201ENSMUST00000052580 2824 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.26
Trim56Q80VI1 Kcnq2-207ENSMUST00000103050 2713 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
Trim56Q80VI1 Pak2-201ENSMUST00000023467 5741 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trim56Q80VI1 Gm2762-202ENSMUST00000201517 2339 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Trim56Q80VI1 Pgd-201ENSMUST00000084124 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trim56Q80VI1 Ubash3b-201ENSMUST00000044155 6354 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trim56Q80VI1 Dhdds-204ENSMUST00000105887 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trim56Q80VI1 Pef1-202ENSMUST00000118199 1915 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
Trim56Q80VI1 Dyrk3-201ENSMUST00000016670 3164 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trim56Q80VI1 Ttll11-201ENSMUST00000028248 3176 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trim56Q80VI1 Trim32-201ENSMUST00000050850 3194 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trim56Q80VI1 9930021J03Rik-204ENSMUST00000177155 6632 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
Trim56Q80VI1 Gpc5-201ENSMUST00000022707 1719 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trim56Q80VI1 Dnajc1-202ENSMUST00000091418 5070 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trim56Q80VI1 Lpar1-201ENSMUST00000055018 3512 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trim56Q80VI1 Zscan22-203ENSMUST00000119989 2087 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Trim56Q80VI1 1500015A07Rik-201ENSMUST00000184181 1865 ntBASIC16.69■□□□□ 0.26
Trim56Q80VI1 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trim56Q80VI1 Fmnl2-205ENSMUST00000155586 3939 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Trim56Q80VI1 Zbed4-201ENSMUST00000041297 5425 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trim56Q80VI1 Elk3-201ENSMUST00000008542 4212 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trim56Q80VI1 Fggy-203ENSMUST00000107091 1395 ntTSL 5 BASIC16.69■□□□□ 0.26
Trim56Q80VI1 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC16.69■□□□□ 0.26
Trim56Q80VI1 Taco1-201ENSMUST00000002048 1383 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trim56Q80VI1 Tcf3-208ENSMUST00000105344 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trim56Q80VI1 Ppp1r1b-206ENSMUST00000150762 1801 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Trim56Q80VI1 Gnb5-202ENSMUST00000213990 1803 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Trim56Q80VI1 Ins2-205ENSMUST00000105933 552 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trim56Q80VI1 Ins2-206ENSMUST00000105934 480 ntAPPRIS P1 TSL 3 BASIC16.69■□□□□ 0.26
Trim56Q80VI1 1700045H11Rik-201ENSMUST00000128056 593 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Trim56Q80VI1 Rnaseh2a-206ENSMUST00000128972 1141 ntTSL 2 BASIC16.69■□□□□ 0.26
Trim56Q80VI1 Gm12786-201ENSMUST00000129617 644 ntTSL 3 BASIC16.69■□□□□ 0.26
Trim56Q80VI1 3000002C10Rik-202ENSMUST00000133495 1008 ntBASIC16.69■□□□□ 0.26
Trim56Q80VI1 Rpl27a-203ENSMUST00000143107 1158 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trim56Q80VI1 Fam219aos-201ENSMUST00000151164 708 ntTSL 2 BASIC16.69■□□□□ 0.26
Trim56Q80VI1 Gm6473-201ENSMUST00000188572 1210 ntBASIC16.69■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 35.1 ms