Protein–RNA interactions for Protein: Q5SX79

Shroom1, Protein Shroom1, mousemouse

Predictions only

Length 823 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shroom1Q5SX79 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Shroom1Q5SX79 Slc4a2-201ENSMUST00000080067 4179 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Shroom1Q5SX79 App-204ENSMUST00000227021 3264 ntAPPRIS ALT2 BASIC15.1■□□□□ 0.01
Shroom1Q5SX79 Iffo1-202ENSMUST00000119527 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Shroom1Q5SX79 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
Shroom1Q5SX79 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Shroom1Q5SX79 Elmod1-201ENSMUST00000048409 2605 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Shroom1Q5SX79 1600025M17Rik-202ENSMUST00000151426 547 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Shroom1Q5SX79 Gm12352-201ENSMUST00000154452 760 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Shroom1Q5SX79 Gstt4-202ENSMUST00000160211 964 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Shroom1Q5SX79 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Shroom1Q5SX79 Gm21854-201ENSMUST00000179901 471 ntBASIC15.1■□□□□ 0.01
Shroom1Q5SX79 Ighv5-13-201ENSMUST00000193550 290 ntBASIC15.1■□□□□ 0.01
Shroom1Q5SX79 Inpp4a-213ENSMUST00000193774 1243 ntTSL 5 BASIC15.1■□□□□ 0.01
Shroom1Q5SX79 Agrp-202ENSMUST00000194091 734 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
Shroom1Q5SX79 Coq7-205ENSMUST00000209146 799 ntTSL 3 BASIC15.1■□□□□ 0.01
Shroom1Q5SX79 Gm7390-201ENSMUST00000212452 1216 ntBASIC15.1■□□□□ 0.01
Shroom1Q5SX79 AC121804.3-201ENSMUST00000223420 295 ntBASIC15.1■□□□□ 0.01
Shroom1Q5SX79 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Shroom1Q5SX79 Dhx34-203ENSMUST00000119102 4310 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Shroom1Q5SX79 Gm5763-201ENSMUST00000155951 1530 ntBASIC15.1■□□□□ 0.01
Shroom1Q5SX79 Disp2-202ENSMUST00000063975 1505 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Shroom1Q5SX79 Gm29683-203ENSMUST00000209071 2488 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Shroom1Q5SX79 Tle1-203ENSMUST00000074216 4369 ntAPPRIS ALT1 TSL 5 BASIC15.1■□□□□ 0.01
Shroom1Q5SX79 Fars2-208ENSMUST00000224611 1750 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
Shroom1Q5SX79 Zufsp-205ENSMUST00000218880 2005 ntTSL 5 BASIC15.1■□□□□ 0.01
Shroom1Q5SX79 Cdca5-201ENSMUST00000025704 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Shroom1Q5SX79 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
Shroom1Q5SX79 Mapt-203ENSMUST00000106989 2250 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Shroom1Q5SX79 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Shroom1Q5SX79 Grik5-201ENSMUST00000003468 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Shroom1Q5SX79 Suv39h2-201ENSMUST00000027956 4327 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Shroom1Q5SX79 Adgrg5-205ENSMUST00000166802 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Shroom1Q5SX79 Rnf146-201ENSMUST00000037548 4402 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
Shroom1Q5SX79 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Shroom1Q5SX79 Camk1g-204ENSMUST00000169907 1968 ntTSL 5 BASIC15.09■□□□□ 0.01
Shroom1Q5SX79 Gata2-201ENSMUST00000015197 3571 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Shroom1Q5SX79 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Shroom1Q5SX79 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Shroom1Q5SX79 Islr2-210ENSMUST00000215950 4109 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Shroom1Q5SX79 Bag6-201ENSMUST00000025250 3858 ntAPPRIS P3 TSL 5 BASIC15.09■□□□□ 0.01
Shroom1Q5SX79 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Shroom1Q5SX79 Cpne1-202ENSMUST00000109607 3441 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Shroom1Q5SX79 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Shroom1Q5SX79 Fbxl19-203ENSMUST00000186207 3178 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Shroom1Q5SX79 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Shroom1Q5SX79 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Shroom1Q5SX79 Spaca3-202ENSMUST00000103223 947 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Shroom1Q5SX79 Icam4-201ENSMUST00000001040 971 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Shroom1Q5SX79 Rdm1-201ENSMUST00000010506 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Shroom1Q5SX79 Crybb3-203ENSMUST00000118226 892 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
Shroom1Q5SX79 Gm14042-201ENSMUST00000120139 833 ntBASIC15.09■□□□□ 0.01
Shroom1Q5SX79 Oaz1-203ENSMUST00000179172 744 ntTSL 5 BASIC15.09■□□□□ 0.01
Shroom1Q5SX79 Gm26515-201ENSMUST00000181141 996 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Shroom1Q5SX79 Gm9522-201ENSMUST00000182394 926 ntBASIC15.09■□□□□ 0.01
Shroom1Q5SX79 Gm6473-201ENSMUST00000188572 1210 ntBASIC15.09■□□□□ 0.01
Shroom1Q5SX79 Srd5a2-201ENSMUST00000043458 854 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Shroom1Q5SX79 Tlcd2-201ENSMUST00000043598 1153 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Shroom1Q5SX79 Oaz1-ps-201ENSMUST00000052440 681 ntBASIC15.09■□□□□ 0.01
Shroom1Q5SX79 Crybb3-201ENSMUST00000076069 816 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Shroom1Q5SX79 Rasal3-204ENSMUST00000135618 3293 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Shroom1Q5SX79 Tbc1d30-201ENSMUST00000064107 5695 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Shroom1Q5SX79 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Shroom1Q5SX79 Zfp647-201ENSMUST00000048854 1608 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Shroom1Q5SX79 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Shroom1Q5SX79 Mon1a-202ENSMUST00000191906 2821 ntTSL 2 BASIC15.09■□□□□ 0.01
Shroom1Q5SX79 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Shroom1Q5SX79 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC15.09■□□□□ 0.01
Shroom1Q5SX79 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Shroom1Q5SX79 Gm44645-201ENSMUST00000205492 1653 ntBASIC15.09■□□□□ 0.01
Shroom1Q5SX79 Jpt1-201ENSMUST00000021083 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Shroom1Q5SX79 Brd2-203ENSMUST00000114242 4483 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Shroom1Q5SX79 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Shroom1Q5SX79 Sh2b1-205ENSMUST00000205733 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Shroom1Q5SX79 Rnf180-203ENSMUST00000224662 2734 ntAPPRIS ALT2 BASIC15.08■□□□□ 0.01
Shroom1Q5SX79 Gtf2h1-201ENSMUST00000006774 2736 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Shroom1Q5SX79 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Shroom1Q5SX79 Wdfy3-206ENSMUST00000174698 3858 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Shroom1Q5SX79 Ciart-202ENSMUST00000159739 1939 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Shroom1Q5SX79 Psmd12-201ENSMUST00000021063 1904 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Shroom1Q5SX79 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Shroom1Q5SX79 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
Shroom1Q5SX79 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Shroom1Q5SX79 Bbs7-203ENSMUST00000108156 2687 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
Shroom1Q5SX79 Clstn1-202ENSMUST00000105691 4459 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Shroom1Q5SX79 Adgrb2-208ENSMUST00000121049 4871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Shroom1Q5SX79 B230359F08Rik-201ENSMUST00000103671 426 ntAPPRIS P1 BASIC15.08■□□□□ 0
Shroom1Q5SX79 Myl4-203ENSMUST00000106957 943 ntAPPRIS P1 TSL 3 BASIC15.08■□□□□ 0
Shroom1Q5SX79 Tex30-211ENSMUST00000150911 960 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
Shroom1Q5SX79 Ilkap-208ENSMUST00000187306 377 ntTSL 5 BASIC15.08■□□□□ 0
Shroom1Q5SX79 Mir124-2hg-206ENSMUST00000189754 525 ntTSL 3 BASIC15.08■□□□□ 0
Shroom1Q5SX79 Gm8515-201ENSMUST00000194852 576 ntBASIC15.08■□□□□ 0
Shroom1Q5SX79 Gm42612-201ENSMUST00000197986 623 ntBASIC15.08■□□□□ 0
Shroom1Q5SX79 Gm43170-201ENSMUST00000199827 612 ntBASIC15.08■□□□□ 0
Shroom1Q5SX79 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC15.08■□□□□ 0
Shroom1Q5SX79 Mzt2-201ENSMUST00000023351 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Shroom1Q5SX79 Cox6b1-201ENSMUST00000075738 618 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Shroom1Q5SX79 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
Shroom1Q5SX79 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
Shroom1Q5SX79 Kpna4-201ENSMUST00000029353 8819 ntTSL 1 (best) BASIC15.08■□□□□ 0
Retrieved 100 of 76,532 protein–RNA pairs in 73.6 ms