Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3bQ3ULL6 Tcf4-248ENSMUST00000202354 2120 ntTSL 5 BASIC15.2■□□□□ 0.02
Upf3bQ3ULL6 Tcf4-257ENSMUST00000202772 2125 ntTSL 5 BASIC15.2■□□□□ 0.02
Upf3bQ3ULL6 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC15.2■□□□□ 0.02
Upf3bQ3ULL6 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3bQ3ULL6 Txndc11-203ENSMUST00000118679 3523 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3bQ3ULL6 Nt5c3b-205ENSMUST00000107399 1427 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3bQ3ULL6 Gm13613-201ENSMUST00000126240 1444 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3bQ3ULL6 Capn7-201ENSMUST00000022451 3648 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3bQ3ULL6 Actr1b-201ENSMUST00000043951 3248 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3bQ3ULL6 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3bQ3ULL6 Fam174a-202ENSMUST00000186780 3460 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3bQ3ULL6 Plekha1-201ENSMUST00000048180 3321 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3bQ3ULL6 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3bQ3ULL6 Arfrp1-202ENSMUST00000108808 1133 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3bQ3ULL6 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC15.2■□□□□ 0.02
Upf3bQ3ULL6 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
Upf3bQ3ULL6 Haghl-207ENSMUST00000140738 1194 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3bQ3ULL6 Gstt1-201ENSMUST00000001713 1037 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3bQ3ULL6 Gm25144-201ENSMUST00000179561 110 ntBASIC15.2■□□□□ 0.02
Upf3bQ3ULL6 Gm25352-201ENSMUST00000179815 110 ntBASIC15.2■□□□□ 0.02
Upf3bQ3ULL6 Saa2-203ENSMUST00000210769 652 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3bQ3ULL6 Gm33337-201ENSMUST00000219594 228 ntTSL 3 BASIC15.2■□□□□ 0.02
Upf3bQ3ULL6 Aif1-201ENSMUST00000025257 847 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
Upf3bQ3ULL6 Ndufc2-201ENSMUST00000032882 683 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3bQ3ULL6 Tlcd2-201ENSMUST00000043598 1153 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3bQ3ULL6 Lin37-201ENSMUST00000043975 998 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3bQ3ULL6 Ndufa8-201ENSMUST00000070112 861 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3bQ3ULL6 Saa2-201ENSMUST00000075982 606 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3bQ3ULL6 Serpina16-201ENSMUST00000095451 1257 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Upf3bQ3ULL6 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3bQ3ULL6 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3bQ3ULL6 Ccnb2-201ENSMUST00000034742 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3bQ3ULL6 Keap1-205ENSMUST00000194542 3151 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3bQ3ULL6 Ralgapb-201ENSMUST00000046274 8366 ntAPPRIS ALT1 TSL 5 BASIC15.2■□□□□ 0.02
Upf3bQ3ULL6 Ppt2-210ENSMUST00000171376 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3bQ3ULL6 Pde4dip-201ENSMUST00000045243 6185 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3bQ3ULL6 Ccnj-202ENSMUST00000119316 3763 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Upf3bQ3ULL6 Ppip5k2-201ENSMUST00000042509 5882 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3bQ3ULL6 Camk1g-204ENSMUST00000169907 1968 ntTSL 5 BASIC15.2■□□□□ 0.02
Upf3bQ3ULL6 Serpina11-202ENSMUST00000120251 1461 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3bQ3ULL6 Epha2-201ENSMUST00000006614 3913 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3bQ3ULL6 Camkk2-201ENSMUST00000111668 4861 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Upf3bQ3ULL6 Atp2a3-201ENSMUST00000021142 4593 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Upf3bQ3ULL6 Cenpl-203ENSMUST00000111620 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Upf3bQ3ULL6 Rbfox2-209ENSMUST00000228087 1694 ntAPPRIS ALT2 BASIC15.19■□□□□ 0.02
Upf3bQ3ULL6 Nr2e3-201ENSMUST00000034831 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Upf3bQ3ULL6 Elk3-201ENSMUST00000008542 4212 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Upf3bQ3ULL6 Gm42893-201ENSMUST00000198035 1502 ntTSL 3 BASIC15.19■□□□□ 0.02
Upf3bQ3ULL6 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Upf3bQ3ULL6 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Upf3bQ3ULL6 Bbs7-203ENSMUST00000108156 2687 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Upf3bQ3ULL6 Ssr1-204ENSMUST00000225319 1610 ntBASIC15.19■□□□□ 0.02
Upf3bQ3ULL6 Orai3-202ENSMUST00000118865 768 ntTSL 3 BASIC15.19■□□□□ 0.02
Upf3bQ3ULL6 Mroh1-217ENSMUST00000162319 1244 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Upf3bQ3ULL6 Cend1-204ENSMUST00000164387 1206 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Upf3bQ3ULL6 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Upf3bQ3ULL6 Prss47-201ENSMUST00000182457 828 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Upf3bQ3ULL6 Mir6956-201ENSMUST00000183598 62 ntBASIC15.19■□□□□ 0.02
Upf3bQ3ULL6 Gm27618-201ENSMUST00000183671 60 ntBASIC15.19■□□□□ 0.02
Upf3bQ3ULL6 Gm16476-201ENSMUST00000221544 139 ntBASIC15.19■□□□□ 0.02
Upf3bQ3ULL6 Dupd1-202ENSMUST00000224735 548 ntBASIC15.19■□□□□ 0.02
Upf3bQ3ULL6 Obp2a-201ENSMUST00000077667 744 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Upf3bQ3ULL6 Mir125a-201ENSMUST00000083545 68 ntBASIC15.19■□□□□ 0.02
Upf3bQ3ULL6 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC15.19■□□□□ 0.02
Upf3bQ3ULL6 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Upf3bQ3ULL6 Rnf217-201ENSMUST00000081989 11013 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Upf3bQ3ULL6 Gnb4-201ENSMUST00000108234 2510 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Upf3bQ3ULL6 Zdhhc23-201ENSMUST00000036321 1380 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Upf3bQ3ULL6 Arhgap8-205ENSMUST00000168811 1464 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Upf3bQ3ULL6 Ints14-201ENSMUST00000037504 2837 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Upf3bQ3ULL6 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Upf3bQ3ULL6 Adam23-205ENSMUST00000114107 6110 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Upf3bQ3ULL6 Dmpk-201ENSMUST00000032568 2761 ntAPPRIS P3 TSL 5 BASIC15.19■□□□□ 0.02
Upf3bQ3ULL6 Fbxl4-201ENSMUST00000039234 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Upf3bQ3ULL6 Ube2g1-203ENSMUST00000138247 3931 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Upf3bQ3ULL6 Ywhaq-201ENSMUST00000049531 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Upf3bQ3ULL6 Raver1-202ENSMUST00000217282 4234 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
Upf3bQ3ULL6 Cd3d-201ENSMUST00000034602 1617 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Upf3bQ3ULL6 F2r-201ENSMUST00000059193 3336 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Upf3bQ3ULL6 Gm15957-201ENSMUST00000118893 974 ntBASIC15.18■□□□□ 0.02
Upf3bQ3ULL6 Gm14268-201ENSMUST00000132465 682 ntTSL 3 BASIC15.18■□□□□ 0.02
Upf3bQ3ULL6 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Upf3bQ3ULL6 Gm27533-201ENSMUST00000183800 152 ntBASIC15.18■□□□□ 0.02
Upf3bQ3ULL6 Gm8239-201ENSMUST00000204094 444 ntTSL 2 BASIC15.18■□□□□ 0.02
Upf3bQ3ULL6 Lpcat1-208ENSMUST00000223060 2141 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Upf3bQ3ULL6 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Upf3bQ3ULL6 Cnpy2-201ENSMUST00000026446 763 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
Upf3bQ3ULL6 Bccip-201ENSMUST00000033282 1244 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Upf3bQ3ULL6 Lce1c-201ENSMUST00000047055 724 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Upf3bQ3ULL6 S100a7a-201ENSMUST00000079286 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Upf3bQ3ULL6 Rhox9-201ENSMUST00000089062 882 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Upf3bQ3ULL6 Cenpm-201ENSMUST00000089155 1109 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Upf3bQ3ULL6 Pdlim4-202ENSMUST00000093109 962 ntTSL 5 BASIC15.18■□□□□ 0.02
Upf3bQ3ULL6 Ppp1r3d-201ENSMUST00000058678 3267 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
Upf3bQ3ULL6 Tdrd6-201ENSMUST00000045717 7055 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
Upf3bQ3ULL6 Zbtb25-204ENSMUST00000176278 1672 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Upf3bQ3ULL6 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Upf3bQ3ULL6 Srp72-202ENSMUST00000120550 2297 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
Upf3bQ3ULL6 Gm37411-201ENSMUST00000194180 2282 ntBASIC15.18■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 35.5 ms