Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Scarb2-201ENSMUST00000031377 4698 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Rfx1P48377 Bnc2-215ENSMUST00000176691 3385 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Rfx1P48377 Gm38346-201ENSMUST00000192379 2639 ntBASIC16.97■□□□□ 0.31
Rfx1P48377 Rasal3-201ENSMUST00000063824 3681 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
Rfx1P48377 Gm38577-201ENSMUST00000221531 4545 ntBASIC16.97■□□□□ 0.31
Rfx1P48377 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Rfx1P48377 Atg16l1-202ENSMUST00000113186 3004 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Rfx1P48377 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Rfx1P48377 Pus7-201ENSMUST00000119946 3407 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
Rfx1P48377 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Rfx1P48377 Cct6a-202ENSMUST00000201414 2454 ntTSL 5 BASIC16.96■□□□□ 0.31
Rfx1P48377 Srrm1-202ENSMUST00000084846 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Rfx1P48377 0610010F05Rik-208ENSMUST00000180260 4128 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Rfx1P48377 Adgrb2-202ENSMUST00000097868 4635 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
Rfx1P48377 Lrrc7-205ENSMUST00000200137 7321 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Rfx1P48377 Sall4-202ENSMUST00000075044 2534 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Rfx1P48377 Steap2-203ENSMUST00000115425 4550 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Rfx1P48377 Cog7-201ENSMUST00000057576 2902 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Rfx1P48377 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC16.96■□□□□ 0.31
Rfx1P48377 Gm29520-201ENSMUST00000191209 1067 ntTSL 5 BASIC16.96■□□□□ 0.31
Rfx1P48377 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Rfx1P48377 Gm42670-201ENSMUST00000201816 1292 ntBASIC16.96■□□□□ 0.31
Rfx1P48377 Tssc4-208ENSMUST00000208779 647 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Rfx1P48377 Tac4-201ENSMUST00000021242 1251 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Rfx1P48377 Zfyve21-206ENSMUST00000222843 705 ntTSL 3 BASIC16.96■□□□□ 0.31
Rfx1P48377 AC102291.3-201ENSMUST00000226566 405 ntBASIC16.96■□□□□ 0.31
Rfx1P48377 Cela3a-201ENSMUST00000024200 958 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
Rfx1P48377 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Rfx1P48377 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Rfx1P48377 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Rfx1P48377 Elk4-201ENSMUST00000027696 1586 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Rfx1P48377 Dusp6-201ENSMUST00000020118 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Rfx1P48377 Radil-204ENSMUST00000110785 3708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Rfx1P48377 Ash2l-204ENSMUST00000110610 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
Rfx1P48377 Il18r1-203ENSMUST00000167723 1919 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
Rfx1P48377 Oser1-202ENSMUST00000104954 1702 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Rfx1P48377 Gpc5-201ENSMUST00000022707 1719 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Rfx1P48377 Pdlim3-201ENSMUST00000034053 1604 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.3
Rfx1P48377 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
Rfx1P48377 Arfip2-206ENSMUST00000131446 3275 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Rfx1P48377 Mavs-202ENSMUST00000110199 3057 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Rfx1P48377 Egr2-203ENSMUST00000127820 2665 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
Rfx1P48377 Spred2-202ENSMUST00000093299 4449 ntTSL 5 BASIC16.95■□□□□ 0.3
Rfx1P48377 Esrrb-202ENSMUST00000110203 2363 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Rfx1P48377 Map3k20-201ENSMUST00000090824 3334 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
Rfx1P48377 Grm6-201ENSMUST00000000631 4291 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
Rfx1P48377 Ric8b-202ENSMUST00000095385 2909 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Rfx1P48377 Ntrk2-208ENSMUST00000225583 2719 ntBASIC16.95■□□□□ 0.3
Rfx1P48377 Pdpk1-204ENSMUST00000115409 4623 ntTSL 5 BASIC16.95■□□□□ 0.3
Rfx1P48377 Kcp-201ENSMUST00000078112 4775 ntTSL 5 BASIC16.95■□□□□ 0.3
Rfx1P48377 Slpi-201ENSMUST00000109367 876 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Rfx1P48377 Gm27628-201ENSMUST00000184911 107 ntBASIC16.95■□□□□ 0.3
Rfx1P48377 Gm21362-201ENSMUST00000194272 928 ntBASIC16.95■□□□□ 0.3
Rfx1P48377 Gm2272-201ENSMUST00000194903 582 ntBASIC16.95■□□□□ 0.3
Rfx1P48377 Ap5z1-202ENSMUST00000196055 2965 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Rfx1P48377 Gm43397-201ENSMUST00000196422 481 ntTSL 3 BASIC16.95■□□□□ 0.3
Rfx1P48377 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC16.95■□□□□ 0.3
Rfx1P48377 Per1-201ENSMUST00000021271 4671 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Rfx1P48377 Mrps18a-201ENSMUST00000024763 884 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Rfx1P48377 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Rfx1P48377 Psma5-201ENSMUST00000090569 1239 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Rfx1P48377 Gm14963-201ENSMUST00000146751 2558 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Rfx1P48377 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Rfx1P48377 Gm6198-201ENSMUST00000191337 2929 ntBASIC16.95■□□□□ 0.3
Rfx1P48377 Grin3a-202ENSMUST00000093859 7491 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Rfx1P48377 Slc22a20-201ENSMUST00000041827 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Rfx1P48377 Pja1-202ENSMUST00000113790 2108 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
Rfx1P48377 Pja1-203ENSMUST00000113792 3038 ntAPPRIS P4 TSL 5 BASIC16.94■□□□□ 0.3
Rfx1P48377 Mbl1-202ENSMUST00000225792 1563 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
Rfx1P48377 Itga6-202ENSMUST00000112101 4156 ntAPPRIS ALT1 TSL 5 BASIC16.94■□□□□ 0.3
Rfx1P48377 Ppp3cb-205ENSMUST00000161445 3298 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Rfx1P48377 Rnf152-201ENSMUST00000058688 8492 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Rfx1P48377 Kif3a-208ENSMUST00000173744 2257 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Rfx1P48377 Rgs6-208ENSMUST00000186458 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Rfx1P48377 Atp4b-201ENSMUST00000033826 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Rfx1P48377 Togaram2-205ENSMUST00000153445 3302 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Rfx1P48377 Scg2-201ENSMUST00000049972 2515 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
Rfx1P48377 AC155714.1-201ENSMUST00000214033 956 ntTSL 5 BASIC16.94■□□□□ 0.3
Rfx1P48377 Gm9182-201ENSMUST00000217829 639 ntBASIC16.94■□□□□ 0.3
Rfx1P48377 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Rfx1P48377 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Rfx1P48377 Ttc3-201ENSMUST00000117648 7417 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Rfx1P48377 Men1-208ENSMUST00000113504 2663 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Rfx1P48377 Cyfip1-201ENSMUST00000032629 6440 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Rfx1P48377 Spata5-209ENSMUST00000198968 2916 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Rfx1P48377 Sgms1-212ENSMUST00000151289 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Rfx1P48377 Skida1-202ENSMUST00000091420 4376 ntAPPRIS P2 TSL 5 BASIC16.94■□□□□ 0.3
Rfx1P48377 Gnb1l-211ENSMUST00000167778 3569 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
Rfx1P48377 Bag6-203ENSMUST00000172571 3599 ntTSL 5 BASIC16.94■□□□□ 0.3
Rfx1P48377 Leng8-201ENSMUST00000037472 5105 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Rfx1P48377 Casc4-202ENSMUST00000089912 3602 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Rfx1P48377 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Rfx1P48377 Gm12500-202ENSMUST00000186471 2428 ntBASIC16.94■□□□□ 0.3
Rfx1P48377 Gtf2i-206ENSMUST00000172715 4114 ntTSL 5 BASIC16.94■□□□□ 0.3
Rfx1P48377 Kcnn2-205ENSMUST00000183850 3546 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Rfx1P48377 Mcm6-201ENSMUST00000027601 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Rfx1P48377 Ap2m1-201ENSMUST00000007216 2937 ntAPPRIS P3 TSL 5 BASIC16.93■□□□□ 0.3
Rfx1P48377 Plekhb1-201ENSMUST00000079176 2079 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
Rfx1P48377 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Rfx1P48377 Gm43156-201ENSMUST00000202338 2127 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 63.9 ms