Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Ccdc153-202ENSMUST00000213891 792 ntAPPRIS ALT2 TSL 3 BASIC18.95■□□□□ 0.62
Scn4aQ9ER60 Csrp2-203ENSMUST00000219502 544 ntTSL 3 BASIC18.95■□□□□ 0.62
Scn4aQ9ER60 Spcs1-203ENSMUST00000226374 592 ntBASIC18.95■□□□□ 0.62
Scn4aQ9ER60 Majin-201ENSMUST00000025699 1239 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Scn4aQ9ER60 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Scn4aQ9ER60 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Scn4aQ9ER60 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Scn4aQ9ER60 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
Scn4aQ9ER60 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Scn4aQ9ER60 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
Scn4aQ9ER60 Esr1-202ENSMUST00000105588 2733 ntTSL 5 BASIC18.95■□□□□ 0.62
Scn4aQ9ER60 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Scn4aQ9ER60 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
Scn4aQ9ER60 Arr3-201ENSMUST00000113769 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Scn4aQ9ER60 Ovca2-201ENSMUST00000071562 2670 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Scn4aQ9ER60 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Scn4aQ9ER60 Gm13611-201ENSMUST00000118269 318 ntBASIC18.95■□□□□ 0.62
Scn4aQ9ER60 Gm8738-201ENSMUST00000172606 329 ntBASIC18.95■□□□□ 0.62
Scn4aQ9ER60 Gm19163-201ENSMUST00000223313 780 ntBASIC18.95■□□□□ 0.62
Scn4aQ9ER60 1700128F08Rik-201ENSMUST00000034483 1110 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Scn4aQ9ER60 Tex13b-201ENSMUST00000044179 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Scn4aQ9ER60 Obp2a-201ENSMUST00000077667 744 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Scn4aQ9ER60 Gm25517-201ENSMUST00000083865 134 ntBASIC18.95■□□□□ 0.62
Scn4aQ9ER60 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Scn4aQ9ER60 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
Scn4aQ9ER60 Egfem1-201ENSMUST00000118531 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Scn4aQ9ER60 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
Scn4aQ9ER60 Tagap1-201ENSMUST00000063683 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Scn4aQ9ER60 Krt25-201ENSMUST00000038004 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Scn4aQ9ER60 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Scn4aQ9ER60 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Scn4aQ9ER60 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Scn4aQ9ER60 Ccdc28b-202ENSMUST00000106035 821 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Scn4aQ9ER60 Gm6335-201ENSMUST00000118081 1194 ntBASIC18.94■□□□□ 0.62
Scn4aQ9ER60 Gm7816-201ENSMUST00000119884 1194 ntBASIC18.94■□□□□ 0.62
Scn4aQ9ER60 Gm15542-201ENSMUST00000121585 1194 ntBASIC18.94■□□□□ 0.62
Scn4aQ9ER60 Gm2231-201ENSMUST00000125661 612 ntBASIC18.94■□□□□ 0.62
Scn4aQ9ER60 1810063I02Rik-201ENSMUST00000130205 274 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Scn4aQ9ER60 Coa3-202ENSMUST00000168089 291 ntTSL 3 BASIC18.94■□□□□ 0.62
Scn4aQ9ER60 Krtap20-2-201ENSMUST00000169954 528 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
Scn4aQ9ER60 Gm27184-201ENSMUST00000185095 607 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Scn4aQ9ER60 Gm18893-201ENSMUST00000198416 943 ntBASIC18.94■□□□□ 0.62
Scn4aQ9ER60 Gm32141-201ENSMUST00000220189 488 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Scn4aQ9ER60 1700001J03Rik-201ENSMUST00000073721 787 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Scn4aQ9ER60 Gm11839-201ENSMUST00000120647 1953 ntBASIC18.94■□□□□ 0.62
Scn4aQ9ER60 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Scn4aQ9ER60 Fcna-201ENSMUST00000028307 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Scn4aQ9ER60 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC18.93■□□□□ 0.62
Scn4aQ9ER60 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Scn4aQ9ER60 Ywhag-205ENSMUST00000198270 1610 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
Scn4aQ9ER60 Prr29-202ENSMUST00000106816 771 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Scn4aQ9ER60 Smyd3-202ENSMUST00000111134 1229 ntTSL 2 BASIC18.93■□□□□ 0.62
Scn4aQ9ER60 9430091E24Rik-201ENSMUST00000127301 1067 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Scn4aQ9ER60 Ighv8-4-201ENSMUST00000178949 294 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
Scn4aQ9ER60 Gm2420-203ENSMUST00000202748 447 ntTSL 5 BASIC18.93■□□□□ 0.62
Scn4aQ9ER60 Gm30437-201ENSMUST00000206086 1201 ntBASIC18.93■□□□□ 0.62
Scn4aQ9ER60 Gm34045-201ENSMUST00000217700 988 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Scn4aQ9ER60 AC135469.1-201ENSMUST00000225984 772 ntBASIC18.93■□□□□ 0.62
Scn4aQ9ER60 Dhrs4-202ENSMUST00000226168 828 ntBASIC18.93■□□□□ 0.62
Scn4aQ9ER60 Cox6a2-201ENSMUST00000033049 680 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Scn4aQ9ER60 Olfr887-201ENSMUST00000074681 930 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
Scn4aQ9ER60 Tmem159-201ENSMUST00000033210 1484 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Scn4aQ9ER60 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
Scn4aQ9ER60 AC115735.4-201ENSMUST00000227460 1944 ntBASIC18.93■□□□□ 0.62
Scn4aQ9ER60 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Scn4aQ9ER60 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Scn4aQ9ER60 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
Scn4aQ9ER60 Skap1-202ENSMUST00000100519 1100 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Scn4aQ9ER60 Ube4bos1-202ENSMUST00000151896 1286 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Scn4aQ9ER60 Gm20470-201ENSMUST00000174654 331 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Scn4aQ9ER60 Hcfc1r1-203ENSMUST00000180140 693 ntAPPRIS P2 TSL 2 BASIC18.93■□□□□ 0.62
Scn4aQ9ER60 2610300A13Rik-201ENSMUST00000192930 503 ntBASIC18.93■□□□□ 0.62
Scn4aQ9ER60 Gm35082-202ENSMUST00000208164 525 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Scn4aQ9ER60 4930448E22Rik-203ENSMUST00000215349 299 ntTSL 3 BASIC18.93■□□□□ 0.62
Scn4aQ9ER60 Cyct-201ENSMUST00000028430 655 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Scn4aQ9ER60 Rec8-201ENSMUST00000002395 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Scn4aQ9ER60 Adh6a-202ENSMUST00000106247 1341 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Scn4aQ9ER60 Gm10451-201ENSMUST00000101281 1598 ntTSL 2 BASIC18.92■□□□□ 0.62
Scn4aQ9ER60 Tmem17-201ENSMUST00000059319 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Scn4aQ9ER60 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Scn4aQ9ER60 Usp16-202ENSMUST00000119504 2562 ntTSL 5 BASIC18.92■□□□□ 0.62
Scn4aQ9ER60 Gm15939-201ENSMUST00000160756 2147 ntTSL 5 BASIC18.92■□□□□ 0.62
Scn4aQ9ER60 Zmynd15-202ENSMUST00000092958 2100 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
Scn4aQ9ER60 Sgce-203ENSMUST00000101677 1656 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Scn4aQ9ER60 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Scn4aQ9ER60 R3hcc1-206ENSMUST00000216152 1467 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Scn4aQ9ER60 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
Scn4aQ9ER60 Gm15046-201ENSMUST00000130153 408 ntTSL 3 BASIC18.92■□□□□ 0.62
Scn4aQ9ER60 Gm14064-201ENSMUST00000134833 727 ntTSL 3 BASIC18.92■□□□□ 0.62
Scn4aQ9ER60 Gm13061-201ENSMUST00000137962 664 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Scn4aQ9ER60 Gm13381-202ENSMUST00000177012 640 ntTSL 5 BASIC18.92■□□□□ 0.62
Scn4aQ9ER60 Gm3809-201ENSMUST00000180973 1006 ntBASIC18.92■□□□□ 0.62
Scn4aQ9ER60 Pmvk-203ENSMUST00000184515 1156 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Scn4aQ9ER60 Mb-201ENSMUST00000019037 966 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
Scn4aQ9ER60 Abracl-204ENSMUST00000220110 768 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Scn4aQ9ER60 E130307A14Rik-213ENSMUST00000155482 2803 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Scn4aQ9ER60 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC18.92■□□□□ 0.62
Scn4aQ9ER60 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Scn4aQ9ER60 Ssr1-204ENSMUST00000225319 1610 ntBASIC18.92■□□□□ 0.62
Scn4aQ9ER60 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 41.8 ms