Protein–RNA interactions for Protein: Q91Y11

Pcdha9, Protocadherin alpha-9, mousemouse

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha9Q91Y11 Mthfsd-202ENSMUST00000116415 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Pcdha9Q91Y11 Hnrnpr-204ENSMUST00000131671 2543 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Pcdha9Q91Y11 Las1l-201ENSMUST00000079987 2530 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Pcdha9Q91Y11 Mcidas-201ENSMUST00000092089 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Pcdha9Q91Y11 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Pcdha9Q91Y11 Dab1-203ENSMUST00000106830 5278 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Pcdha9Q91Y11 Fbxo44-205ENSMUST00000151127 1403 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Pcdha9Q91Y11 Gm26681-201ENSMUST00000180851 1440 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Pcdha9Q91Y11 Gtf2ird1-208ENSMUST00000167084 3283 ntTSL 5 BASIC15.12■□□□□ 0.01
Pcdha9Q91Y11 Ppp1r3d-201ENSMUST00000058678 3267 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Pcdha9Q91Y11 Csad-201ENSMUST00000023805 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Pcdha9Q91Y11 Car4-201ENSMUST00000103194 1256 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Pcdha9Q91Y11 Gm15440-201ENSMUST00000110042 1231 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Pcdha9Q91Y11 Igfbp4-204ENSMUST00000140772 742 ntTSL 2 BASIC15.12■□□□□ 0.01
Pcdha9Q91Y11 1700007J10Rik-202ENSMUST00000153431 1111 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Pcdha9Q91Y11 Hps1-204ENSMUST00000160455 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Pcdha9Q91Y11 Gm27680-201ENSMUST00000184192 160 ntBASIC15.12■□□□□ 0.01
Pcdha9Q91Y11 Gm17837-201ENSMUST00000186435 985 ntBASIC15.12■□□□□ 0.01
Pcdha9Q91Y11 Gm38294-201ENSMUST00000192831 381 ntBASIC15.12■□□□□ 0.01
Pcdha9Q91Y11 Gm6916-202ENSMUST00000205523 195 ntBASIC15.12■□□□□ 0.01
Pcdha9Q91Y11 Vsig2-204ENSMUST00000215271 891 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Pcdha9Q91Y11 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Pcdha9Q91Y11 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Pcdha9Q91Y11 Pdlim3-201ENSMUST00000034053 1604 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Pcdha9Q91Y11 AC126549.2-201ENSMUST00000223997 1976 ntBASIC15.12■□□□□ 0.01
Pcdha9Q91Y11 Rnf25-201ENSMUST00000027357 1479 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Pcdha9Q91Y11 Cuedc2-201ENSMUST00000051234 1833 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Pcdha9Q91Y11 9130008F23Rik-201ENSMUST00000068258 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Pcdha9Q91Y11 Actr1b-201ENSMUST00000043951 3248 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Pcdha9Q91Y11 Adamts2-201ENSMUST00000040523 7266 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Pcdha9Q91Y11 Gm9917-201ENSMUST00000180865 5192 ntTSL 3 BASIC15.12■□□□□ 0.01
Pcdha9Q91Y11 Etfdh-201ENSMUST00000029386 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Pcdha9Q91Y11 Morn1-201ENSMUST00000030915 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Pcdha9Q91Y11 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Pcdha9Q91Y11 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Pcdha9Q91Y11 Gm5478-201ENSMUST00000100184 2566 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Pcdha9Q91Y11 Pak1-205ENSMUST00000206984 2794 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Pcdha9Q91Y11 Atp13a3-202ENSMUST00000100013 7310 ntAPPRIS P4 TSL 5 BASIC15.12■□□□□ 0.01
Pcdha9Q91Y11 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Pcdha9Q91Y11 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Pcdha9Q91Y11 Tnfrsf11a-201ENSMUST00000027559 5027 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Pcdha9Q91Y11 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Pcdha9Q91Y11 Prn-201ENSMUST00000124100 2132 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
Pcdha9Q91Y11 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Pcdha9Q91Y11 Cant1-201ENSMUST00000017620 4182 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Pcdha9Q91Y11 Gm26565-201ENSMUST00000181642 1968 ntTSL 5 BASIC15.11■□□□□ 0.01
Pcdha9Q91Y11 Tcf3-208ENSMUST00000105344 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Pcdha9Q91Y11 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Pcdha9Q91Y11 Gcsh-201ENSMUST00000040484 1443 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Pcdha9Q91Y11 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Pcdha9Q91Y11 Mrpl58-209ENSMUST00000153983 2596 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Pcdha9Q91Y11 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Pcdha9Q91Y11 Uqcrq-203ENSMUST00000109021 405 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Pcdha9Q91Y11 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Pcdha9Q91Y11 Tmem109-207ENSMUST00000147699 1096 ntTSL 2 BASIC15.11■□□□□ 0.01
Pcdha9Q91Y11 Rnf2-203ENSMUST00000186415 1106 ntTSL 5 BASIC15.11■□□□□ 0.01
Pcdha9Q91Y11 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Pcdha9Q91Y11 Aqp10-ps-201ENSMUST00000199555 611 ntBASIC15.11■□□□□ 0.01
Pcdha9Q91Y11 Gm44344-201ENSMUST00000200287 129 ntBASIC15.11■□□□□ 0.01
Pcdha9Q91Y11 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC15.11■□□□□ 0.01
Pcdha9Q91Y11 AC126408.1-201ENSMUST00000225184 523 ntBASIC15.11■□□□□ 0.01
Pcdha9Q91Y11 Uts2-201ENSMUST00000030803 538 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Pcdha9Q91Y11 Tex12-201ENSMUST00000034568 895 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Pcdha9Q91Y11 Clec4g-202ENSMUST00000062037 1242 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Pcdha9Q91Y11 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Pcdha9Q91Y11 Sept1-202ENSMUST00000106314 1486 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Pcdha9Q91Y11 Ffar2-202ENSMUST00000163504 1913 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
Pcdha9Q91Y11 Gpc5-201ENSMUST00000022707 1719 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Pcdha9Q91Y11 Gpt-201ENSMUST00000023203 1749 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Pcdha9Q91Y11 Pnck-201ENSMUST00000002087 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Pcdha9Q91Y11 AC159621.2-201ENSMUST00000223519 1326 ntBASIC15.11■□□□□ 0.01
Pcdha9Q91Y11 Nfyb-204ENSMUST00000130911 2554 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Pcdha9Q91Y11 Pex3-202ENSMUST00000105539 1961 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Pcdha9Q91Y11 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Pcdha9Q91Y11 Fam192a-201ENSMUST00000034226 2873 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Pcdha9Q91Y11 Paf1-201ENSMUST00000003529 2003 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Pcdha9Q91Y11 Sorbs3-204ENSMUST00000227929 2460 ntBASIC15.1■□□□□ 0.01
Pcdha9Q91Y11 Scrt1-201ENSMUST00000096365 4010 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Pcdha9Q91Y11 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Pcdha9Q91Y11 Map3k5-202ENSMUST00000120259 4289 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Pcdha9Q91Y11 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Pcdha9Q91Y11 Men1-207ENSMUST00000113503 1851 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Pcdha9Q91Y11 Fam167a-201ENSMUST00000121288 4231 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Pcdha9Q91Y11 Gm13223-201ENSMUST00000118609 747 ntBASIC15.1■□□□□ 0.01
Pcdha9Q91Y11 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC15.1■□□□□ 0.01
Pcdha9Q91Y11 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC15.1■□□□□ 0.01
Pcdha9Q91Y11 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC15.1■□□□□ 0.01
Pcdha9Q91Y11 Gm11515-201ENSMUST00000150818 701 ntTSL 2 BASIC15.1■□□□□ 0.01
Pcdha9Q91Y11 Pkig-209ENSMUST00000164399 983 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
Pcdha9Q91Y11 Gm37117-201ENSMUST00000194238 589 ntTSL 5 BASIC15.1■□□□□ 0.01
Pcdha9Q91Y11 Gm30934-201ENSMUST00000215803 815 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Pcdha9Q91Y11 Gm46209-201ENSMUST00000217912 553 ntBASIC15.1■□□□□ 0.01
Pcdha9Q91Y11 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Pcdha9Q91Y11 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Pcdha9Q91Y11 Pdlim4-202ENSMUST00000093109 962 ntTSL 5 BASIC15.1■□□□□ 0.01
Pcdha9Q91Y11 Pgd-201ENSMUST00000084124 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Pcdha9Q91Y11 Pdgfrl-201ENSMUST00000034004 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Pcdha9Q91Y11 Il11ra1-201ENSMUST00000098132 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Pcdha9Q91Y11 Rasgrp2-208ENSMUST00000113476 2296 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Pcdha9Q91Y11 2010007H06Rik-202ENSMUST00000186025 4934 ntTSL 2 BASIC15.1■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 25.2 ms