Protein–RNA interactions for Protein: Q8CHD8

Rab11fip3, Rab11 family-interacting protein 3, mousemouse

Predictions only

Length 1,047 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rab11fip3Q8CHD8 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Rab11fip3Q8CHD8 Arhgef40-204ENSMUST00000182061 4756 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Rab11fip3Q8CHD8 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Rab11fip3Q8CHD8 Bptf-201ENSMUST00000057892 11488 ntAPPRIS P2 TSL 5 BASIC18.35■□□□□ 0.53
Rab11fip3Q8CHD8 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Rab11fip3Q8CHD8 St6gal2-201ENSMUST00000025000 6066 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Rab11fip3Q8CHD8 Kmt5b-208ENSMUST00000113977 6002 ntAPPRIS P3 TSL 5 BASIC18.35■□□□□ 0.53
Rab11fip3Q8CHD8 Dsel-201ENSMUST00000035462 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Rab11fip3Q8CHD8 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Rab11fip3Q8CHD8 Gjd2-201ENSMUST00000090275 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Rab11fip3Q8CHD8 Gm42690-201ENSMUST00000197921 1836 ntBASIC18.35■□□□□ 0.53
Rab11fip3Q8CHD8 Syn2-201ENSMUST00000009538 2708 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
Rab11fip3Q8CHD8 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC18.35■□□□□ 0.53
Rab11fip3Q8CHD8 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Rab11fip3Q8CHD8 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Rab11fip3Q8CHD8 Kdm8-201ENSMUST00000033010 2389 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Rab11fip3Q8CHD8 Tsc22d2-201ENSMUST00000099090 9799 ntAPPRIS P3 TSL 3 BASIC18.34■□□□□ 0.53
Rab11fip3Q8CHD8 Sppl2b-201ENSMUST00000035597 2869 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Rab11fip3Q8CHD8 Wisp3-201ENSMUST00000076713 1419 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Rab11fip3Q8CHD8 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC18.34■□□□□ 0.53
Rab11fip3Q8CHD8 Camsap1-202ENSMUST00000114167 7981 ntAPPRIS P2 TSL 5 BASIC18.34■□□□□ 0.53
Rab11fip3Q8CHD8 Camsap1-201ENSMUST00000091268 7978 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Rab11fip3Q8CHD8 Acox1-201ENSMUST00000066587 3987 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Rab11fip3Q8CHD8 Atl1-201ENSMUST00000021466 5150 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Rab11fip3Q8CHD8 Gm15240-201ENSMUST00000118156 720 ntBASIC18.34■□□□□ 0.53
Rab11fip3Q8CHD8 Gm12091-201ENSMUST00000146791 830 ntBASIC18.34■□□□□ 0.53
Rab11fip3Q8CHD8 Ube2i-205ENSMUST00000172587 508 ntTSL 2 BASIC18.34■□□□□ 0.53
Rab11fip3Q8CHD8 Pax5-213ENSMUST00000173821 996 ntTSL 5 BASIC18.34■□□□□ 0.53
Rab11fip3Q8CHD8 Ighv1-51-201ENSMUST00000192903 354 ntBASIC18.34■□□□□ 0.53
Rab11fip3Q8CHD8 Sf3a1-201ENSMUST00000002198 4920 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Rab11fip3Q8CHD8 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC18.34■□□□□ 0.53
Rab11fip3Q8CHD8 Spred1-201ENSMUST00000028829 6016 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Rab11fip3Q8CHD8 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Rab11fip3Q8CHD8 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Rab11fip3Q8CHD8 Bahd1-201ENSMUST00000036578 4594 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Rab11fip3Q8CHD8 Gm13589-201ENSMUST00000146404 1675 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Rab11fip3Q8CHD8 Etfrf1-205ENSMUST00000111724 1618 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Rab11fip3Q8CHD8 Prn-201ENSMUST00000124100 2132 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
Rab11fip3Q8CHD8 Pxn-213ENSMUST00000202564 2126 ntTSL 5 BASIC18.34■□□□□ 0.53
Rab11fip3Q8CHD8 Wdr47-201ENSMUST00000051145 4222 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Rab11fip3Q8CHD8 Lrrc41-201ENSMUST00000030471 3065 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Rab11fip3Q8CHD8 Psmd13-201ENSMUST00000026560 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Rab11fip3Q8CHD8 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
Rab11fip3Q8CHD8 1500015A07Rik-201ENSMUST00000184181 1865 ntBASIC18.33■□□□□ 0.53
Rab11fip3Q8CHD8 Nr1d1-201ENSMUST00000064941 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Rab11fip3Q8CHD8 Rbm46-201ENSMUST00000048647 1794 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
Rab11fip3Q8CHD8 Slc6a9-201ENSMUST00000030269 3479 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Rab11fip3Q8CHD8 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
Rab11fip3Q8CHD8 Mpl-203ENSMUST00000106375 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Rab11fip3Q8CHD8 Gm6159-201ENSMUST00000191249 1724 ntBASIC18.33■□□□□ 0.52
Rab11fip3Q8CHD8 Gm43509-201ENSMUST00000196551 2594 ntBASIC18.33■□□□□ 0.52
Rab11fip3Q8CHD8 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Rab11fip3Q8CHD8 Akirin1-ps-201ENSMUST00000119676 458 ntBASIC18.33■□□□□ 0.52
Rab11fip3Q8CHD8 Gm24420-201ENSMUST00000176676 59 ntBASIC18.33■□□□□ 0.52
Rab11fip3Q8CHD8 Flg-208ENSMUST00000180308 1076 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Rab11fip3Q8CHD8 Gm26600-201ENSMUST00000181637 1256 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Rab11fip3Q8CHD8 AC124510.1-201ENSMUST00000222659 583 ntTSL 5 BASIC18.33■□□□□ 0.52
Rab11fip3Q8CHD8 Taf11-201ENSMUST00000025057 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Rab11fip3Q8CHD8 Tmco5b-201ENSMUST00000040856 1237 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Rab11fip3Q8CHD8 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Rab11fip3Q8CHD8 Sema5b-202ENSMUST00000120756 4646 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Rab11fip3Q8CHD8 Por-202ENSMUST00000122113 2606 ntTSL 2 BASIC18.33■□□□□ 0.52
Rab11fip3Q8CHD8 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Rab11fip3Q8CHD8 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC18.33■□□□□ 0.52
Rab11fip3Q8CHD8 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Rab11fip3Q8CHD8 Fam208a-201ENSMUST00000022450 7590 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Rab11fip3Q8CHD8 Neu2-203ENSMUST00000164128 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rab11fip3Q8CHD8 Ralgapa1-201ENSMUST00000085385 7901 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rab11fip3Q8CHD8 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rab11fip3Q8CHD8 Pum2-202ENSMUST00000111122 6311 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rab11fip3Q8CHD8 Nell1-201ENSMUST00000081872 6617 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rab11fip3Q8CHD8 Ccna2-201ENSMUST00000029270 2965 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rab11fip3Q8CHD8 Plekhb1-206ENSMUST00000107047 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rab11fip3Q8CHD8 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Rab11fip3Q8CHD8 Gnb2-215ENSMUST00000170293 993 ntTSL 5 BASIC18.32■□□□□ 0.52
Rab11fip3Q8CHD8 Tac2-202ENSMUST00000179960 852 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rab11fip3Q8CHD8 Platr12-202ENSMUST00000189722 549 ntTSL 3 BASIC18.32■□□□□ 0.52
Rab11fip3Q8CHD8 4930592C13Rik-201ENSMUST00000196791 661 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Rab11fip3Q8CHD8 Timm9-206ENSMUST00000221367 836 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Rab11fip3Q8CHD8 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rab11fip3Q8CHD8 AC149294.4-201ENSMUST00000227870 882 ntBASIC18.32■□□□□ 0.52
Rab11fip3Q8CHD8 Tac2-201ENSMUST00000026466 678 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rab11fip3Q8CHD8 Ccdc58-201ENSMUST00000099937 747 ntTSL 3 BASIC18.32■□□□□ 0.52
Rab11fip3Q8CHD8 Gm10605-202ENSMUST00000183019 3198 ntBASIC18.32■□□□□ 0.52
Rab11fip3Q8CHD8 Pitpnm2-209ENSMUST00000161938 5866 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rab11fip3Q8CHD8 Cadm2-203ENSMUST00000120898 2768 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Rab11fip3Q8CHD8 Pcdh20-201ENSMUST00000061628 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rab11fip3Q8CHD8 Ces2f-201ENSMUST00000076384 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rab11fip3Q8CHD8 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rab11fip3Q8CHD8 Rnf123-201ENSMUST00000047746 4722 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Rab11fip3Q8CHD8 Sgpl1-202ENSMUST00000122259 4102 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rab11fip3Q8CHD8 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rab11fip3Q8CHD8 Xylt2-201ENSMUST00000116349 3442 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rab11fip3Q8CHD8 Ltv1-201ENSMUST00000019950 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rab11fip3Q8CHD8 Gm37736-201ENSMUST00000193564 2802 ntBASIC18.31■□□□□ 0.52
Rab11fip3Q8CHD8 Dzip3-201ENSMUST00000114516 3331 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
Rab11fip3Q8CHD8 Rps6ka5-201ENSMUST00000043599 4406 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Rab11fip3Q8CHD8 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Rab11fip3Q8CHD8 Ccdc88c-202ENSMUST00000085096 6313 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Rab11fip3Q8CHD8 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 37.2 ms