Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Brf1Q8CFK2 Arfrp1-202ENSMUST00000108808 1133 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Brf1Q8CFK2 Gm12428-201ENSMUST00000119844 727 ntBASIC17.18■□□□□ 0.34
Brf1Q8CFK2 Gm27618-201ENSMUST00000183671 60 ntBASIC17.18■□□□□ 0.34
Brf1Q8CFK2 Gm40493-201ENSMUST00000210223 400 ntTSL 3 BASIC17.18■□□□□ 0.34
Brf1Q8CFK2 Gm16476-201ENSMUST00000221544 139 ntBASIC17.18■□□□□ 0.34
Brf1Q8CFK2 S100a7a-201ENSMUST00000079286 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Brf1Q8CFK2 Rab9b-201ENSMUST00000058814 3980 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Brf1Q8CFK2 Dap3-207ENSMUST00000173135 1409 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
Brf1Q8CFK2 Syngr1-201ENSMUST00000009727 4180 ntAPPRIS P4 TSL 1 (best) BASIC17.18■□□□□ 0.34
Brf1Q8CFK2 Epsti1-201ENSMUST00000022591 1870 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Brf1Q8CFK2 Cmpk1-201ENSMUST00000030491 3170 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Brf1Q8CFK2 Psap-202ENSMUST00000105465 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Brf1Q8CFK2 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Brf1Q8CFK2 Cbln4-201ENSMUST00000087950 2902 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Brf1Q8CFK2 Ctu2-201ENSMUST00000116412 3066 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Brf1Q8CFK2 Dhrs4-201ENSMUST00000022821 1392 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Brf1Q8CFK2 Ube2d-ps-205ENSMUST00000142942 1840 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Brf1Q8CFK2 Hmga2-201ENSMUST00000072777 3710 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Brf1Q8CFK2 Mesd-201ENSMUST00000094215 4492 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Brf1Q8CFK2 Nt5c3b-205ENSMUST00000107399 1427 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Brf1Q8CFK2 Hist3h2bb-ps-201ENSMUST00000117558 465 ntBASIC17.17■□□□□ 0.34
Brf1Q8CFK2 9530003J23Rik-202ENSMUST00000159193 1033 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Brf1Q8CFK2 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
Brf1Q8CFK2 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
Brf1Q8CFK2 Jaml-204ENSMUST00000215880 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Brf1Q8CFK2 AC121801.1-201ENSMUST00000225363 1899 ntBASIC17.17■□□□□ 0.34
Brf1Q8CFK2 Cnpy2-201ENSMUST00000026446 763 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Brf1Q8CFK2 Mbp-202ENSMUST00000062446 2186 ntAPPRIS P4 TSL 1 (best) BASIC17.17■□□□□ 0.34
Brf1Q8CFK2 Chd4-201ENSMUST00000056889 6697 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Brf1Q8CFK2 Mpl-201ENSMUST00000006556 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Brf1Q8CFK2 Sftpb-204ENSMUST00000183018 1490 ntAPPRIS P2 TSL 5 BASIC17.17■□□□□ 0.34
Brf1Q8CFK2 Ddi2-201ENSMUST00000102484 9553 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Brf1Q8CFK2 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
Brf1Q8CFK2 Tmem211-201ENSMUST00000086615 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Brf1Q8CFK2 Ebf3-208ENSMUST00000210774 2994 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Brf1Q8CFK2 Gcnt2-205ENSMUST00000225759 1366 ntAPPRIS ALT2 BASIC17.16■□□□□ 0.34
Brf1Q8CFK2 Ubl4b-201ENSMUST00000052853 1387 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
Brf1Q8CFK2 Palm-201ENSMUST00000046945 2651 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Brf1Q8CFK2 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Brf1Q8CFK2 Cd72-202ENSMUST00000098104 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Brf1Q8CFK2 Ahctf1-201ENSMUST00000027768 8506 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Brf1Q8CFK2 Dusp14-203ENSMUST00000108101 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Brf1Q8CFK2 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC17.16■□□□□ 0.34
Brf1Q8CFK2 Mir1897-201ENSMUST00000122581 272 ntBASIC17.16■□□□□ 0.34
Brf1Q8CFK2 4930412M03Rik-201ENSMUST00000130746 1111 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Brf1Q8CFK2 Gm27533-201ENSMUST00000183800 152 ntBASIC17.16■□□□□ 0.34
Brf1Q8CFK2 Shd-206ENSMUST00000225145 998 ntBASIC17.16■□□□□ 0.34
Brf1Q8CFK2 Lce1c-201ENSMUST00000047055 724 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Brf1Q8CFK2 Fam159a-201ENSMUST00000053157 593 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Brf1Q8CFK2 Cenpm-201ENSMUST00000089155 1109 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Brf1Q8CFK2 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC17.16■□□□□ 0.34
Brf1Q8CFK2 Gbe1-207ENSMUST00000171132 3303 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Brf1Q8CFK2 Prrxl1-203ENSMUST00000187377 1629 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Brf1Q8CFK2 Abl2-201ENSMUST00000027888 3549 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
Brf1Q8CFK2 Phka2-202ENSMUST00000112376 2310 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Brf1Q8CFK2 Ctdp1-201ENSMUST00000036229 3713 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Brf1Q8CFK2 9130008F23Rik-201ENSMUST00000068258 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Brf1Q8CFK2 Sh2b1-204ENSMUST00000205497 2854 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Brf1Q8CFK2 Doc2b-201ENSMUST00000021209 4361 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Brf1Q8CFK2 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Brf1Q8CFK2 Gnas-210ENSMUST00000109095 2059 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Brf1Q8CFK2 Pax7-201ENSMUST00000030508 5854 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Brf1Q8CFK2 Ffar2-202ENSMUST00000163504 1913 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
Brf1Q8CFK2 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Brf1Q8CFK2 Zfp853-201ENSMUST00000180336 1956 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Brf1Q8CFK2 Map3k5-202ENSMUST00000120259 4289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Brf1Q8CFK2 Map2k3os-201ENSMUST00000123544 1291 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Brf1Q8CFK2 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Brf1Q8CFK2 Gm8584-201ENSMUST00000171982 758 ntBASIC17.15■□□□□ 0.34
Brf1Q8CFK2 Rpl32-202ENSMUST00000203816 906 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
Brf1Q8CFK2 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Brf1Q8CFK2 Serpina16-201ENSMUST00000095451 1257 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Brf1Q8CFK2 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC17.15■□□□□ 0.34
Brf1Q8CFK2 Muc20-201ENSMUST00000041123 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Brf1Q8CFK2 Prrg4-201ENSMUST00000028593 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Brf1Q8CFK2 Cobll1-201ENSMUST00000090896 4867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Brf1Q8CFK2 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Brf1Q8CFK2 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Brf1Q8CFK2 Agap1-202ENSMUST00000074945 10069 ntTSL 5 BASIC17.15■□□□□ 0.34
Brf1Q8CFK2 Sema4b-204ENSMUST00000205822 3760 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Brf1Q8CFK2 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC17.15■□□□□ 0.34
Brf1Q8CFK2 Mdfic-201ENSMUST00000101663 3431 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Brf1Q8CFK2 Mdfic-206ENSMUST00000189359 3435 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Brf1Q8CFK2 Mdfic-207ENSMUST00000190255 3431 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Brf1Q8CFK2 Pgbd5-201ENSMUST00000052580 2824 ntAPPRIS P2 TSL 5 BASIC17.15■□□□□ 0.34
Brf1Q8CFK2 Myrf-201ENSMUST00000088013 5674 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.34
Brf1Q8CFK2 Kdm7a-201ENSMUST00000002305 9566 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
Brf1Q8CFK2 Ywhag-205ENSMUST00000198270 1610 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Brf1Q8CFK2 Brpf1-209ENSMUST00000204198 4307 ntTSL 5 BASIC17.14■□□□□ 0.33
Brf1Q8CFK2 A3galt2-202ENSMUST00000106077 2114 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
Brf1Q8CFK2 Myo9b-203ENSMUST00000170242 7297 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
Brf1Q8CFK2 Rcbtb1-202ENSMUST00000043227 3903 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Brf1Q8CFK2 Cdk18-201ENSMUST00000027697 4355 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Brf1Q8CFK2 Fbrs-202ENSMUST00000205432 4166 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
Brf1Q8CFK2 Lpar1-201ENSMUST00000055018 3512 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
Brf1Q8CFK2 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Brf1Q8CFK2 Tbc1d22b-201ENSMUST00000048677 3592 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Brf1Q8CFK2 Slc46a3-201ENSMUST00000031655 2434 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Brf1Q8CFK2 Rph3al-203ENSMUST00000108420 695 ntTSL 3 BASIC17.14■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 48.5 ms