Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Gtf2ird1-201ENSMUST00000073161 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Sh3rf1Q69ZI1 Nphs2-201ENSMUST00000027896 3116 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Sh3rf1Q69ZI1 Kctd20-203ENSMUST00000118762 3839 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Sh3rf1Q69ZI1 Fam83e-201ENSMUST00000129507 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Sh3rf1Q69ZI1 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
Sh3rf1Q69ZI1 Camk2d-203ENSMUST00000106399 4169 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Sh3rf1Q69ZI1 Eml3-201ENSMUST00000096241 3322 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Sh3rf1Q69ZI1 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC14.44□□□□□ -0.1
Sh3rf1Q69ZI1 Stip1-201ENSMUST00000025918 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Sh3rf1Q69ZI1 Ankrd10-202ENSMUST00000169782 5156 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Sh3rf1Q69ZI1 Tmem220-201ENSMUST00000061786 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Sh3rf1Q69ZI1 Ift52-201ENSMUST00000018002 2248 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Sh3rf1Q69ZI1 Il15ra-206ENSMUST00000114834 784 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Sh3rf1Q69ZI1 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Sh3rf1Q69ZI1 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC14.44□□□□□ -0.1
Sh3rf1Q69ZI1 Gm15862-201ENSMUST00000146349 361 ntTSL 2 BASIC14.44□□□□□ -0.1
Sh3rf1Q69ZI1 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Sh3rf1Q69ZI1 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Sh3rf1Q69ZI1 Mir6990-201ENSMUST00000183724 91 ntBASIC14.44□□□□□ -0.1
Sh3rf1Q69ZI1 Gm37444-201ENSMUST00000193605 439 ntBASIC14.44□□□□□ -0.1
Sh3rf1Q69ZI1 Gm20553-201ENSMUST00000204205 844 ntBASIC14.44□□□□□ -0.1
Sh3rf1Q69ZI1 Zfp787-205ENSMUST00000207957 880 ntTSL 5 BASIC14.44□□□□□ -0.1
Sh3rf1Q69ZI1 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC14.44□□□□□ -0.1
Sh3rf1Q69ZI1 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC14.44□□□□□ -0.1
Sh3rf1Q69ZI1 Pde8a-201ENSMUST00000026672 3802 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Sh3rf1Q69ZI1 Narfl-204ENSMUST00000134108 2062 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Sh3rf1Q69ZI1 Traf1-201ENSMUST00000028234 2069 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
Sh3rf1Q69ZI1 Me2-201ENSMUST00000025439 2455 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Sh3rf1Q69ZI1 Unc5b-203ENSMUST00000218637 3653 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Sh3rf1Q69ZI1 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Sh3rf1Q69ZI1 Ngef-201ENSMUST00000027477 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Sh3rf1Q69ZI1 Xrra1-201ENSMUST00000036155 2731 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Sh3rf1Q69ZI1 Mrps35-201ENSMUST00000036111 4162 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Sh3rf1Q69ZI1 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC14.44□□□□□ -0.1
Sh3rf1Q69ZI1 Lin54-208ENSMUST00000149714 3869 ntTSL 5 BASIC14.44□□□□□ -0.1
Sh3rf1Q69ZI1 Olfr718-ps1-203ENSMUST00000215102 4913 ntAPPRIS P5 TSL 5 BASIC14.44□□□□□ -0.1
Sh3rf1Q69ZI1 Acadm-201ENSMUST00000072697 2047 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Sh3rf1Q69ZI1 Dennd4c-201ENSMUST00000045512 5648 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Sh3rf1Q69ZI1 Casz1-202ENSMUST00000122222 7926 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
Sh3rf1Q69ZI1 Gm43364-201ENSMUST00000196046 3274 ntBASIC14.44□□□□□ -0.1
Sh3rf1Q69ZI1 Arhgef4-201ENSMUST00000047664 3287 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Sh3rf1Q69ZI1 Tfap2a-202ENSMUST00000110193 2863 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Sh3rf1Q69ZI1 Myt1l-204ENSMUST00000218198 2735 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Sh3rf1Q69ZI1 Rarg-201ENSMUST00000043172 2953 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
Sh3rf1Q69ZI1 Iqcj-201ENSMUST00000063263 1579 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Sh3rf1Q69ZI1 Tsc2-205ENSMUST00000226398 5459 ntAPPRIS P2 BASIC14.43□□□□□ -0.1
Sh3rf1Q69ZI1 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC14.43□□□□□ -0.1
Sh3rf1Q69ZI1 Kcnc4-201ENSMUST00000009617 3667 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Sh3rf1Q69ZI1 Il1rapl2-202ENSMUST00000113063 3437 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Sh3rf1Q69ZI1 Zfp169-203ENSMUST00000176176 2162 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Sh3rf1Q69ZI1 Gm13410-201ENSMUST00000117058 1415 ntBASIC14.43□□□□□ -0.1
Sh3rf1Q69ZI1 Zfp316-202ENSMUST00000161448 6891 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Sh3rf1Q69ZI1 Adamts7-201ENSMUST00000113059 5379 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
Sh3rf1Q69ZI1 Tfap2c-206ENSMUST00000170744 2776 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Sh3rf1Q69ZI1 Eif4e3-201ENSMUST00000032151 2515 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Sh3rf1Q69ZI1 Sema6d-208ENSMUST00000103241 6157 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
Sh3rf1Q69ZI1 Gm27198-201ENSMUST00000184172 1517 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Sh3rf1Q69ZI1 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC14.43□□□□□ -0.1
Sh3rf1Q69ZI1 Rassf5-201ENSMUST00000027688 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Sh3rf1Q69ZI1 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC14.43□□□□□ -0.1
Sh3rf1Q69ZI1 Styxl1-204ENSMUST00000111163 1276 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Sh3rf1Q69ZI1 Gm14268-201ENSMUST00000132465 682 ntTSL 3 BASIC14.43□□□□□ -0.1
Sh3rf1Q69ZI1 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC14.43□□□□□ -0.1
Sh3rf1Q69ZI1 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC14.43□□□□□ -0.1
Sh3rf1Q69ZI1 Gm18889-201ENSMUST00000174284 929 ntBASIC14.43□□□□□ -0.1
Sh3rf1Q69ZI1 Gm43474-201ENSMUST00000196415 774 ntBASIC14.43□□□□□ -0.1
Sh3rf1Q69ZI1 Slc7a7-209ENSMUST00000226753 2126 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
Sh3rf1Q69ZI1 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
Sh3rf1Q69ZI1 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Sh3rf1Q69ZI1 Gpr146-202ENSMUST00000053120 1040 ntBASIC14.43□□□□□ -0.1
Sh3rf1Q69ZI1 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
Sh3rf1Q69ZI1 Olfr520-201ENSMUST00000098264 951 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
Sh3rf1Q69ZI1 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC14.43□□□□□ -0.1
Sh3rf1Q69ZI1 Mavs-202ENSMUST00000110199 3057 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Sh3rf1Q69ZI1 Dnase1l1-201ENSMUST00000019232 1625 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Sh3rf1Q69ZI1 Cyp2u1-201ENSMUST00000106337 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Sh3rf1Q69ZI1 Metap2-206ENSMUST00000180840 2551 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Sh3rf1Q69ZI1 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
Sh3rf1Q69ZI1 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Sh3rf1Q69ZI1 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Sh3rf1Q69ZI1 Gtf2ird1-229ENSMUST00000202554 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Sh3rf1Q69ZI1 Kcnh2-201ENSMUST00000036092 4221 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Sh3rf1Q69ZI1 Dlk1-205ENSMUST00000109844 1703 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Sh3rf1Q69ZI1 Speg-205ENSMUST00000113590 3393 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Sh3rf1Q69ZI1 Ppia-206ENSMUST00000213200 1450 ntTSL 5 BASIC14.43□□□□□ -0.1
Sh3rf1Q69ZI1 Lysmd4-201ENSMUST00000058771 2898 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Sh3rf1Q69ZI1 Kcna5-201ENSMUST00000060972 2862 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
Sh3rf1Q69ZI1 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Sh3rf1Q69ZI1 Pid1-204ENSMUST00000176559 1564 ntTSL 2 BASIC14.43□□□□□ -0.1
Sh3rf1Q69ZI1 Ell-201ENSMUST00000093454 3072 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Sh3rf1Q69ZI1 Gm21983-201ENSMUST00000154724 1690 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
Sh3rf1Q69ZI1 Krt14-201ENSMUST00000007272 1698 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Sh3rf1Q69ZI1 Nacc2-201ENSMUST00000028300 6378 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Sh3rf1Q69ZI1 Zfp612-202ENSMUST00000212754 4863 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Sh3rf1Q69ZI1 Gm39244-202ENSMUST00000210837 1857 ntTSL 5 BASIC14.42□□□□□ -0.1
Sh3rf1Q69ZI1 Syvn1-201ENSMUST00000025723 2780 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Sh3rf1Q69ZI1 Lime1-201ENSMUST00000048077 1959 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Sh3rf1Q69ZI1 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Sh3rf1Q69ZI1 Gm42928-201ENSMUST00000197338 3339 ntBASIC14.42□□□□□ -0.1
Sh3rf1Q69ZI1 Lrrc56-202ENSMUST00000070458 2502 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 28.9 ms