Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Dpm3-201ENSMUST00000040824 404 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim28Q62318 Akr1b7-201ENSMUST00000007449 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim28Q62318 Fggy-202ENSMUST00000079223 1891 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Trim28Q62318 Ctgf-201ENSMUST00000020171 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim28Q62318 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim28Q62318 Rbmx2-201ENSMUST00000033433 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim28Q62318 Gjd2-201ENSMUST00000090275 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim28Q62318 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim28Q62318 Entpd5-204ENSMUST00000117286 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim28Q62318 Serpinh1-201ENSMUST00000094154 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim28Q62318 Lipo3-201ENSMUST00000025694 2768 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim28Q62318 Camk2b-203ENSMUST00000066431 1603 ntAPPRIS ALT1 TSL 5 BASIC18.34■□□□□ 0.53
Trim28Q62318 Slc2a6-201ENSMUST00000045702 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim28Q62318 Mbtd1-201ENSMUST00000063645 2138 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Trim28Q62318 Tmpo-202ENSMUST00000072239 3533 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Trim28Q62318 Rad51-201ENSMUST00000028795 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Trim28Q62318 Clec4g-201ENSMUST00000058040 1441 ntTSL 5 BASIC18.33■□□□□ 0.53
Trim28Q62318 Tagap1-201ENSMUST00000063683 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Trim28Q62318 Lrrc10-201ENSMUST00000073834 1428 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
Trim28Q62318 Gm45133-201ENSMUST00000207548 2773 ntBASIC18.33■□□□□ 0.53
Trim28Q62318 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Trim28Q62318 Foxl1-201ENSMUST00000181609 2705 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
Trim28Q62318 Snrpa-202ENSMUST00000122202 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Trim28Q62318 Adcyap1r1-208ENSMUST00000172084 1344 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
Trim28Q62318 4933430H06Rik-201ENSMUST00000200924 1343 ntBASIC18.33■□□□□ 0.53
Trim28Q62318 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim28Q62318 Gm13689-201ENSMUST00000119360 685 ntBASIC18.33■□□□□ 0.52
Trim28Q62318 Gm16175-201ENSMUST00000128181 248 ntTSL 3 BASIC18.33■□□□□ 0.52
Trim28Q62318 Meg3-208ENSMUST00000143847 706 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Trim28Q62318 Gm9002-201ENSMUST00000178437 499 ntBASIC18.33■□□□□ 0.52
Trim28Q62318 Asb1-205ENSMUST00000188081 1272 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Trim28Q62318 Asb1-206ENSMUST00000188879 1299 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Trim28Q62318 Sgce-205ENSMUST00000115579 1696 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim28Q62318 Ace-201ENSMUST00000001963 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim28Q62318 Gm7324-201ENSMUST00000094051 1647 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
Trim28Q62318 Tmem184a-201ENSMUST00000044002 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim28Q62318 Iffo1-202ENSMUST00000119527 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim28Q62318 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim28Q62318 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim28Q62318 Syt8-204ENSMUST00000118276 1503 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim28Q62318 Slc22a18-201ENSMUST00000052348 1525 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim28Q62318 Bid-201ENSMUST00000004560 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim28Q62318 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim28Q62318 Nat6-201ENSMUST00000093785 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim28Q62318 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Trim28Q62318 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim28Q62318 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim28Q62318 Defb30-203ENSMUST00000111208 503 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim28Q62318 Defb30-204ENSMUST00000111209 721 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim28Q62318 Pisd-ps1-201ENSMUST00000119128 1115 ntBASIC18.32■□□□□ 0.52
Trim28Q62318 Calhm3-201ENSMUST00000178630 1044 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Trim28Q62318 Gm29481-201ENSMUST00000189080 1049 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Trim28Q62318 Fcrl1-204ENSMUST00000191666 925 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim28Q62318 Gm15411-202ENSMUST00000201913 668 ntTSL 3 BASIC18.32■□□□□ 0.52
Trim28Q62318 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim28Q62318 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Trim28Q62318 Ppp1r3d-201ENSMUST00000058678 3267 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Trim28Q62318 Ociad2-205ENSMUST00000201908 2378 ntTSL 2 BASIC18.32■□□□□ 0.52
Trim28Q62318 Actr1b-201ENSMUST00000043951 3248 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim28Q62318 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim28Q62318 Zbtb11-201ENSMUST00000050248 4920 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Trim28Q62318 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim28Q62318 Zfp853-201ENSMUST00000180336 1956 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Trim28Q62318 Higd1a-205ENSMUST00000215007 1980 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Trim28Q62318 Pak1-205ENSMUST00000206984 2794 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Trim28Q62318 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim28Q62318 Mtif2-202ENSMUST00000093239 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim28Q62318 Gm28372-201ENSMUST00000188900 1876 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Trim28Q62318 Papd7-201ENSMUST00000044081 3994 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim28Q62318 Papolb-201ENSMUST00000099400 4239 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Trim28Q62318 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Trim28Q62318 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Trim28Q62318 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Trim28Q62318 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim28Q62318 Gata4-202ENSMUST00000118022 3374 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim28Q62318 Grn-201ENSMUST00000049460 2340 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim28Q62318 Fam169b-206ENSMUST00000210558 2815 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Trim28Q62318 Gm13066-201ENSMUST00000145263 884 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Trim28Q62318 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC18.31■□□□□ 0.52
Trim28Q62318 Elane-201ENSMUST00000046091 984 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim28Q62318 A730061H03Rik-201ENSMUST00000066106 465 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Trim28Q62318 Itpripl1-203ENSMUST00000154021 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim28Q62318 2900005J15Rik-202ENSMUST00000171190 2025 ntBASIC18.31■□□□□ 0.52
Trim28Q62318 Rnf135-201ENSMUST00000017839 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim28Q62318 Gm11732-201ENSMUST00000151381 1742 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Trim28Q62318 Gsdma3-201ENSMUST00000073295 1477 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim28Q62318 Zfp879-201ENSMUST00000049625 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim28Q62318 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim28Q62318 Zc3hc1-210ENSMUST00000152391 1673 ntTSL 5 BASIC18.31■□□□□ 0.52
Trim28Q62318 Slc25a54-201ENSMUST00000029478 1673 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim28Q62318 Iah1-204ENSMUST00000223345 1890 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Trim28Q62318 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim28Q62318 Atpaf2-201ENSMUST00000108721 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim28Q62318 Gm9742-201ENSMUST00000165220 1553 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Trim28Q62318 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim28Q62318 Adam23-204ENSMUST00000114103 2655 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Trim28Q62318 Slc38a7-201ENSMUST00000040481 3333 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim28Q62318 Slc39a8-202ENSMUST00000081978 3314 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim28Q62318 Kcnh4-201ENSMUST00000107361 3748 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Trim28Q62318 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 63.3 ms