Protein–RNA interactions for Protein: P27548

Cd40lg, CD40 ligand, mousemouse

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd40lgP27548 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cd40lgP27548 Mocs1-204ENSMUST00000173033 2588 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cd40lgP27548 L2hgdh-201ENSMUST00000021370 3340 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cd40lgP27548 Adamts7-207ENSMUST00000147250 4833 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cd40lgP27548 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cd40lgP27548 Aste1-201ENSMUST00000035181 2755 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cd40lgP27548 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cd40lgP27548 Vmn1r198-203ENSMUST00000226909 6259 ntAPPRIS P2 BASIC13.14□□□□□ -0.31
Cd40lgP27548 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
Cd40lgP27548 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC13.14□□□□□ -0.31
Cd40lgP27548 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC13.14□□□□□ -0.31
Cd40lgP27548 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC13.14□□□□□ -0.31
Cd40lgP27548 Ly6g6e-204ENSMUST00000172959 501 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cd40lgP27548 Gm42560-201ENSMUST00000201216 1023 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Cd40lgP27548 Ifnl2-201ENSMUST00000081684 702 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cd40lgP27548 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cd40lgP27548 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cd40lgP27548 Lmo7-201ENSMUST00000100337 6092 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cd40lgP27548 Kcng1-202ENSMUST00000109191 4089 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Cd40lgP27548 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cd40lgP27548 Sv2b-202ENSMUST00000165175 5524 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cd40lgP27548 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cd40lgP27548 Gm37691-201ENSMUST00000192147 2573 ntBASIC13.14□□□□□ -0.31
Cd40lgP27548 Gm996-204ENSMUST00000191602 4812 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
Cd40lgP27548 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Cd40lgP27548 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cd40lgP27548 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC13.13□□□□□ -0.31
Cd40lgP27548 Paox-201ENSMUST00000026537 4655 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cd40lgP27548 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cd40lgP27548 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC13.13□□□□□ -0.31
Cd40lgP27548 Elovl6-205ENSMUST00000199910 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cd40lgP27548 Smo-201ENSMUST00000001812 3779 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cd40lgP27548 Gtf2ird1-201ENSMUST00000073161 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cd40lgP27548 AI849053-201ENSMUST00000181021 2658 ntTSL 3 BASIC13.13□□□□□ -0.31
Cd40lgP27548 Asb2-201ENSMUST00000021617 2690 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cd40lgP27548 Depdc1b-201ENSMUST00000051594 2563 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cd40lgP27548 Unc93b1-203ENSMUST00000162708 2266 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cd40lgP27548 Myog-201ENSMUST00000027730 1495 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cd40lgP27548 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cd40lgP27548 Mir449b-201ENSMUST00000104833 80 ntBASIC13.13□□□□□ -0.31
Cd40lgP27548 Gpr153-202ENSMUST00000105650 3838 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
Cd40lgP27548 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
Cd40lgP27548 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Cd40lgP27548 Hist3h2bb-ps-201ENSMUST00000117558 465 ntBASIC13.13□□□□□ -0.31
Cd40lgP27548 Gm15920-201ENSMUST00000118998 402 ntBASIC13.13□□□□□ -0.31
Cd40lgP27548 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Cd40lgP27548 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Cd40lgP27548 Gm5479-201ENSMUST00000160578 435 ntBASIC13.13□□□□□ -0.31
Cd40lgP27548 1700086L19Rik-202ENSMUST00000185822 1028 ntTSL 3 BASIC13.13□□□□□ -0.31
Cd40lgP27548 Ighv8-7-201ENSMUST00000194349 297 ntBASIC13.13□□□□□ -0.31
Cd40lgP27548 4930573H18Rik-201ENSMUST00000197696 906 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Cd40lgP27548 Klk2-ps-201ENSMUST00000205342 571 ntBASIC13.13□□□□□ -0.31
Cd40lgP27548 Gm44872-201ENSMUST00000207864 420 ntBASIC13.13□□□□□ -0.31
Cd40lgP27548 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
Cd40lgP27548 Gm16029-201ENSMUST00000161643 2427 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Cd40lgP27548 Ncan-201ENSMUST00000002412 7195 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cd40lgP27548 Sh3glb1-201ENSMUST00000163279 3961 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cd40lgP27548 Wdr45b-201ENSMUST00000026173 2321 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cd40lgP27548 D6Ertd527e-204ENSMUST00000204927 2218 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cd40lgP27548 Kcnc4-201ENSMUST00000009617 3667 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cd40lgP27548 Ripor2-201ENSMUST00000038477 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cd40lgP27548 Arhgap33-203ENSMUST00000207858 4337 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cd40lgP27548 Eif2b2-201ENSMUST00000004910 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cd40lgP27548 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Cd40lgP27548 Spg20-204ENSMUST00000118118 3981 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cd40lgP27548 Chchd5-201ENSMUST00000035481 1325 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cd40lgP27548 Tmem37-201ENSMUST00000056089 1311 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cd40lgP27548 Brd4-201ENSMUST00000003726 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cd40lgP27548 Luc7l3-209ENSMUST00000166312 5244 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Cd40lgP27548 Rubie-203ENSMUST00000227803 2430 ntBASIC13.12□□□□□ -0.31
Cd40lgP27548 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cd40lgP27548 Smg9-201ENSMUST00000002280 2242 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cd40lgP27548 Mdfic-201ENSMUST00000101663 3431 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cd40lgP27548 Mdfic-207ENSMUST00000190255 3431 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Cd40lgP27548 Mtrr-209ENSMUST00000223398 3861 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cd40lgP27548 CT025626.1-201ENSMUST00000223735 1455 ntBASIC13.12□□□□□ -0.31
Cd40lgP27548 Yeats2-201ENSMUST00000090052 5997 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cd40lgP27548 Ispd-202ENSMUST00000220519 3122 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Cd40lgP27548 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cd40lgP27548 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cd40lgP27548 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cd40lgP27548 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC13.12□□□□□ -0.31
Cd40lgP27548 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC13.12□□□□□ -0.31
Cd40lgP27548 Tmem86b-204ENSMUST00000206610 522 ntTSL 3 BASIC13.12□□□□□ -0.31
Cd40lgP27548 Gm18049-201ENSMUST00000208909 581 ntBASIC13.12□□□□□ -0.31
Cd40lgP27548 Lin37-201ENSMUST00000043975 998 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cd40lgP27548 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cd40lgP27548 Gm11738-201ENSMUST00000134069 2158 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Cd40lgP27548 Celf4-207ENSMUST00000225477 2626 ntAPPRIS P3 BASIC13.12□□□□□ -0.31
Cd40lgP27548 Pcolce-201ENSMUST00000031731 1626 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cd40lgP27548 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cd40lgP27548 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cd40lgP27548 2810402E24Rik-201ENSMUST00000190699 3040 ntBASIC13.12□□□□□ -0.31
Cd40lgP27548 Adamts16-201ENSMUST00000080145 4981 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cd40lgP27548 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cd40lgP27548 Foxo4-201ENSMUST00000062000 3162 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cd40lgP27548 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cd40lgP27548 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cd40lgP27548 Gpx3-201ENSMUST00000082430 1594 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cd40lgP27548 Gpr137c-201ENSMUST00000146150 3917 ntAPPRIS P2 TSL 5 BASIC13.11□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 38.2 ms