Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 1700080E11Rik-202ENSMUST00000190661 682 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Col1a1P11087 Gm38266-201ENSMUST00000194931 421 ntBASIC16.44■□□□□ 0.22
Col1a1P11087 Gm43822-201ENSMUST00000200285 476 ntBASIC16.44■□□□□ 0.22
Col1a1P11087 AC133598.1-201ENSMUST00000224327 660 ntBASIC16.44■□□□□ 0.22
Col1a1P11087 Rwdd3-201ENSMUST00000039761 1145 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Col1a1P11087 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Col1a1P11087 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Col1a1P11087 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Col1a1P11087 Dlk1-205ENSMUST00000109844 1703 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Col1a1P11087 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Col1a1P11087 1700066M21Rik-201ENSMUST00000042734 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Col1a1P11087 Mapk7-201ENSMUST00000079080 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Col1a1P11087 Gm4081-201ENSMUST00000195287 1838 ntBASIC16.44■□□□□ 0.22
Col1a1P11087 Gpr160-203ENSMUST00000108259 1916 ntAPPRIS P1 TSL 3 BASIC16.44■□□□□ 0.22
Col1a1P11087 Gm9742-201ENSMUST00000165220 1553 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Col1a1P11087 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC16.44■□□□□ 0.22
Col1a1P11087 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Col1a1P11087 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Col1a1P11087 Fundc1-201ENSMUST00000026016 1983 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Col1a1P11087 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC16.43■□□□□ 0.22
Col1a1P11087 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Col1a1P11087 Gm13350-201ENSMUST00000120519 479 ntBASIC16.43■□□□□ 0.22
Col1a1P11087 Ccdc70-201ENSMUST00000017193 1054 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Col1a1P11087 Spc24-204ENSMUST00000216057 627 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Col1a1P11087 AC131690.1-201ENSMUST00000218406 374 ntBASIC16.43■□□□□ 0.22
Col1a1P11087 Lsm7-208ENSMUST00000220225 1129 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Col1a1P11087 Mdk-201ENSMUST00000028672 1054 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Col1a1P11087 Rpl10-202ENSMUST00000074085 855 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Col1a1P11087 Gm24447-201ENSMUST00000083977 338 ntBASIC16.43■□□□□ 0.22
Col1a1P11087 Rpl10-201ENSMUST00000008826 799 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Col1a1P11087 Gpr31b-201ENSMUST00000091648 960 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
Col1a1P11087 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Col1a1P11087 Trim15-201ENSMUST00000025329 1843 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
Col1a1P11087 Wbp2-201ENSMUST00000074628 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Col1a1P11087 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Col1a1P11087 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Col1a1P11087 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Col1a1P11087 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC16.43■□□□□ 0.22
Col1a1P11087 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Col1a1P11087 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Col1a1P11087 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Col1a1P11087 Crk-201ENSMUST00000017920 3642 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Col1a1P11087 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Col1a1P11087 Lrch4-202ENSMUST00000175968 2036 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
Col1a1P11087 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Col1a1P11087 Gm10584-201ENSMUST00000207036 2628 ntBASIC16.42■□□□□ 0.22
Col1a1P11087 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Col1a1P11087 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col1a1P11087 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col1a1P11087 Styxl1-202ENSMUST00000111161 963 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Col1a1P11087 Gm15236-201ENSMUST00000117309 379 ntBASIC16.42■□□□□ 0.22
Col1a1P11087 Gm16122-201ENSMUST00000142625 1158 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Col1a1P11087 S100a14-202ENSMUST00000167598 1059 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col1a1P11087 Dcdc2b-203ENSMUST00000179209 864 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
Col1a1P11087 Gm38241-201ENSMUST00000192641 898 ntBASIC16.42■□□□□ 0.22
Col1a1P11087 Gm29741-201ENSMUST00000192667 421 ntBASIC16.42■□□□□ 0.22
Col1a1P11087 Utp23-201ENSMUST00000059599 740 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Col1a1P11087 Olfr222-201ENSMUST00000071943 1115 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
Col1a1P11087 Tldc2-201ENSMUST00000099140 608 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Col1a1P11087 Gm13730-201ENSMUST00000121036 1462 ntBASIC16.42■□□□□ 0.22
Col1a1P11087 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
Col1a1P11087 Selplg-201ENSMUST00000100874 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col1a1P11087 Camk2b-208ENSMUST00000109812 1875 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Col1a1P11087 Unc5a-202ENSMUST00000109994 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col1a1P11087 Tomm34-202ENSMUST00000109384 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col1a1P11087 Cep295nl-202ENSMUST00000168100 1602 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
Col1a1P11087 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col1a1P11087 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col1a1P11087 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col1a1P11087 Nlrx1-203ENSMUST00000169651 3621 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col1a1P11087 Map2k6-202ENSMUST00000100260 2088 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Col1a1P11087 B130055M24Rik-201ENSMUST00000144796 1778 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Col1a1P11087 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col1a1P11087 Tmem28-201ENSMUST00000096363 3909 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
Col1a1P11087 Gm10327-201ENSMUST00000105222 1002 ntBASIC16.42■□□□□ 0.22
Col1a1P11087 Cpsf4l-203ENSMUST00000106617 1123 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Col1a1P11087 Rhox2f-201ENSMUST00000115173 799 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
Col1a1P11087 Ict1os-201ENSMUST00000125653 1052 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Col1a1P11087 Gm15869-201ENSMUST00000126427 734 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Col1a1P11087 4930481A15Rik-201ENSMUST00000128542 2106 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Col1a1P11087 Gm12199-201ENSMUST00000137567 517 ntTSL 3 BASIC16.42■□□□□ 0.22
Col1a1P11087 Hoxb5os-202ENSMUST00000150698 596 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Col1a1P11087 Armc2-208ENSMUST00000162405 1135 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Col1a1P11087 Crb3-204ENSMUST00000163763 868 ntAPPRIS P3 TSL 2 BASIC16.42■□□□□ 0.22
Col1a1P11087 Men1-210ENSMUST00000166909 295 ntTSL 3 BASIC16.42■□□□□ 0.22
Col1a1P11087 Gm17180-201ENSMUST00000172211 435 ntTSL 3 BASIC16.42■□□□□ 0.22
Col1a1P11087 Gm27243-201ENSMUST00000183964 521 ntBASIC16.42■□□□□ 0.22
Col1a1P11087 Gm42550-201ENSMUST00000201553 960 ntBASIC16.42■□□□□ 0.22
Col1a1P11087 Gm34549-203ENSMUST00000208300 896 ntTSL 5 BASIC16.42■□□□□ 0.22
Col1a1P11087 Nanos3-201ENSMUST00000070102 730 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col1a1P11087 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col1a1P11087 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col1a1P11087 Tmem211-201ENSMUST00000086615 1827 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col1a1P11087 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Col1a1P11087 Stk40-201ENSMUST00000094761 3492 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col1a1P11087 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col1a1P11087 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col1a1P11087 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col1a1P11087 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col1a1P11087 Tmem159-202ENSMUST00000118737 1395 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 23.5 ms