Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Grk6-205ENSMUST00000224653 2976 ntBASIC14.09□□□□□ -0.15
Lima1Q9ERG0 Hk2-204ENSMUST00000170833 2792 ntTSL 5 BASIC14.09□□□□□ -0.15
Lima1Q9ERG0 Cog3-201ENSMUST00000049168 4222 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Lima1Q9ERG0 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Lima1Q9ERG0 Gm16685-201ENSMUST00000181286 1592 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Lima1Q9ERG0 Ptpn11-202ENSMUST00000100770 5599 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Lima1Q9ERG0 Taf3-201ENSMUST00000026888 4792 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Lima1Q9ERG0 Prrt3-201ENSMUST00000101059 3304 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.15
Lima1Q9ERG0 Sirt4-202ENSMUST00000112067 1645 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Lima1Q9ERG0 Igsf9b-202ENSMUST00000133213 4239 ntAPPRIS P2 TSL 5 BASIC14.08□□□□□ -0.15
Lima1Q9ERG0 Rubcn-204ENSMUST00000119810 3371 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.15
Lima1Q9ERG0 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC14.08□□□□□ -0.15
Lima1Q9ERG0 Plekhb1-201ENSMUST00000079176 2079 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.15
Lima1Q9ERG0 AC121801.1-201ENSMUST00000225363 1899 ntBASIC14.08□□□□□ -0.16
Lima1Q9ERG0 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Lima1Q9ERG0 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC14.08□□□□□ -0.16
Lima1Q9ERG0 Gm5105-201ENSMUST00000053318 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Lima1Q9ERG0 Get4-202ENSMUST00000110878 1180 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Lima1Q9ERG0 Gm13597-201ENSMUST00000121239 375 ntBASIC14.08□□□□□ -0.16
Lima1Q9ERG0 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC14.08□□□□□ -0.16
Lima1Q9ERG0 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Lima1Q9ERG0 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC14.08□□□□□ -0.16
Lima1Q9ERG0 Saa2-203ENSMUST00000210769 652 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Lima1Q9ERG0 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Lima1Q9ERG0 Saa2-201ENSMUST00000075982 606 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Lima1Q9ERG0 Gm12626-201ENSMUST00000117339 1983 ntBASIC14.08□□□□□ -0.16
Lima1Q9ERG0 Gm12623-201ENSMUST00000119849 1983 ntBASIC14.08□□□□□ -0.16
Lima1Q9ERG0 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
Lima1Q9ERG0 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Lima1Q9ERG0 Mettl14-201ENSMUST00000029759 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Lima1Q9ERG0 Hid1-201ENSMUST00000044152 3236 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Lima1Q9ERG0 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Lima1Q9ERG0 Cyp2t4-201ENSMUST00000108385 1599 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
Lima1Q9ERG0 Knop1-204ENSMUST00000106550 5524 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
Lima1Q9ERG0 Map2k7-211ENSMUST00000145165 2879 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Lima1Q9ERG0 Gm38346-201ENSMUST00000192379 2639 ntBASIC14.08□□□□□ -0.16
Lima1Q9ERG0 Pcdha6-202ENSMUST00000193777 5367 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Lima1Q9ERG0 Ebf4-201ENSMUST00000110286 2670 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Lima1Q9ERG0 Pou2f2-209ENSMUST00000175774 7047 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lima1Q9ERG0 Il11-201ENSMUST00000094892 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lima1Q9ERG0 Igf2os-203ENSMUST00000141681 4778 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Lima1Q9ERG0 Npc2-201ENSMUST00000021668 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lima1Q9ERG0 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC14.07□□□□□ -0.16
Lima1Q9ERG0 Pik3cd-204ENSMUST00000105690 4921 ntAPPRIS P4 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lima1Q9ERG0 Gm42688-201ENSMUST00000101253 3628 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
Lima1Q9ERG0 AC122901.1-201ENSMUST00000214203 1790 ntBASIC14.07□□□□□ -0.16
Lima1Q9ERG0 Mbp-204ENSMUST00000080658 2063 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Lima1Q9ERG0 Mcm6-201ENSMUST00000027601 2910 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lima1Q9ERG0 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC14.07□□□□□ -0.16
Lima1Q9ERG0 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC14.07□□□□□ -0.16
Lima1Q9ERG0 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
Lima1Q9ERG0 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
Lima1Q9ERG0 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC14.07□□□□□ -0.16
Lima1Q9ERG0 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Lima1Q9ERG0 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Lima1Q9ERG0 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lima1Q9ERG0 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lima1Q9ERG0 Clcn4-203ENSMUST00000210061 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lima1Q9ERG0 Pcdhga8-201ENSMUST00000066149 4730 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lima1Q9ERG0 Fam122b-203ENSMUST00000114841 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lima1Q9ERG0 Tmem251-201ENSMUST00000057416 3367 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lima1Q9ERG0 Nphs2-201ENSMUST00000027896 3116 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lima1Q9ERG0 Ap2a1-203ENSMUST00000166972 3449 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lima1Q9ERG0 Uhrf1bp1l-201ENSMUST00000020112 6448 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lima1Q9ERG0 Gm26565-201ENSMUST00000181642 1968 ntTSL 5 BASIC14.07□□□□□ -0.16
Lima1Q9ERG0 Slc25a37-201ENSMUST00000037064 4174 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lima1Q9ERG0 Ptbp3-205ENSMUST00000148331 2016 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
Lima1Q9ERG0 Zfp146-201ENSMUST00000062181 2029 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lima1Q9ERG0 Osbpl11-201ENSMUST00000039733 4520 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lima1Q9ERG0 Srgn-204ENSMUST00000160987 1727 ntAPPRIS P1 TSL 3 BASIC14.07□□□□□ -0.16
Lima1Q9ERG0 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Lima1Q9ERG0 Htatip2-201ENSMUST00000085272 1418 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lima1Q9ERG0 Grin2a-202ENSMUST00000115835 5023 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
Lima1Q9ERG0 Ap4b1-207ENSMUST00000200377 1823 ntTSL 5 BASIC14.06□□□□□ -0.16
Lima1Q9ERG0 E430024P14Rik-203ENSMUST00000160545 2833 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Lima1Q9ERG0 Bhlhb9-204ENSMUST00000180025 2812 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
Lima1Q9ERG0 Usf1-208ENSMUST00000161241 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Lima1Q9ERG0 Clec16a-205ENSMUST00000115827 2949 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Lima1Q9ERG0 Gm38102-201ENSMUST00000192791 1935 ntBASIC14.06□□□□□ -0.16
Lima1Q9ERG0 Hdgfl2-212ENSMUST00000226053 2270 ntAPPRIS P2 BASIC14.06□□□□□ -0.16
Lima1Q9ERG0 Tspyl5-201ENSMUST00000042021 4010 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
Lima1Q9ERG0 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Lima1Q9ERG0 Egr2-203ENSMUST00000127820 2665 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
Lima1Q9ERG0 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Lima1Q9ERG0 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Lima1Q9ERG0 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Lima1Q9ERG0 Mmp2-201ENSMUST00000034187 3078 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Lima1Q9ERG0 Men1-202ENSMUST00000078137 2738 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Lima1Q9ERG0 Nt5c-202ENSMUST00000106530 836 ntTSL 3 BASIC14.06□□□□□ -0.16
Lima1Q9ERG0 Rps19-201ENSMUST00000108428 1284 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Lima1Q9ERG0 Gm14140-201ENSMUST00000119999 995 ntBASIC14.06□□□□□ -0.16
Lima1Q9ERG0 Gm13375-201ENSMUST00000126967 854 ntTSL 2 BASIC14.06□□□□□ -0.16
Lima1Q9ERG0 Plpp7-202ENSMUST00000140762 634 ntTSL 3 BASIC14.06□□□□□ -0.16
Lima1Q9ERG0 Pcp2-205ENSMUST00000142431 524 ntTSL 2 BASIC14.06□□□□□ -0.16
Lima1Q9ERG0 Dusp3-205ENSMUST00000143177 391 ntTSL 3 BASIC14.06□□□□□ -0.16
Lima1Q9ERG0 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC14.06□□□□□ -0.16
Lima1Q9ERG0 Hsf4-203ENSMUST00000172525 1276 ntTSL 5 BASIC14.06□□□□□ -0.16
Lima1Q9ERG0 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC14.06□□□□□ -0.16
Lima1Q9ERG0 Psmb5-202ENSMUST00000227257 622 ntBASIC14.06□□□□□ -0.16
Lima1Q9ERG0 Hspb7-201ENSMUST00000102486 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 33.2 ms