Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Scn4aQ9ER60 1700029H14Rik-205ENSMUST00000187391 1408 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
Scn4aQ9ER60 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Scn4aQ9ER60 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Scn4aQ9ER60 Gm26956-201ENSMUST00000182176 986 ntBASIC18.99■□□□□ 0.63
Scn4aQ9ER60 Omt2b-201ENSMUST00000043734 735 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
Scn4aQ9ER60 Camk2b-208ENSMUST00000109812 1875 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Scn4aQ9ER60 Slc22a20-201ENSMUST00000041827 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Scn4aQ9ER60 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Scn4aQ9ER60 Slc43a3-201ENSMUST00000090726 2583 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Scn4aQ9ER60 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Scn4aQ9ER60 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Scn4aQ9ER60 Zfp385a-201ENSMUST00000168828 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Scn4aQ9ER60 Rnf133-201ENSMUST00000063548 1308 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Scn4aQ9ER60 Apbb1-213ENSMUST00000189265 1429 ntTSL 5 BASIC18.98■□□□□ 0.63
Scn4aQ9ER60 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
Scn4aQ9ER60 Tex19.1-201ENSMUST00000039088 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Scn4aQ9ER60 Gm16202-201ENSMUST00000117532 544 ntBASIC18.98■□□□□ 0.63
Scn4aQ9ER60 Gm13388-201ENSMUST00000126659 425 ntTSL 3 BASIC18.98■□□□□ 0.63
Scn4aQ9ER60 4930404N11Rik-201ENSMUST00000020456 691 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Scn4aQ9ER60 Gm34809-203ENSMUST00000222945 509 ntTSL 5 BASIC18.98■□□□□ 0.63
Scn4aQ9ER60 AC099645.1-201ENSMUST00000226476 1105 ntBASIC18.98■□□□□ 0.63
Scn4aQ9ER60 Plp2-201ENSMUST00000033486 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Scn4aQ9ER60 C1qb-201ENSMUST00000046384 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Scn4aQ9ER60 Olfr1368-201ENSMUST00000055298 1064 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
Scn4aQ9ER60 Ccdc70-202ENSMUST00000070649 961 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Scn4aQ9ER60 Tnfaip8-207ENSMUST00000148159 1921 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Scn4aQ9ER60 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Scn4aQ9ER60 Smarcb1-201ENSMUST00000000925 1660 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
Scn4aQ9ER60 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
Scn4aQ9ER60 Olfr1349-204ENSMUST00000207820 1325 ntAPPRIS P1 TSL 3 BASIC18.98■□□□□ 0.63
Scn4aQ9ER60 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Scn4aQ9ER60 Cuedc2-201ENSMUST00000051234 1833 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
Scn4aQ9ER60 Il11ra1-201ENSMUST00000098132 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Scn4aQ9ER60 AC124392.1-201ENSMUST00000225172 5324 ntBASIC18.98■□□□□ 0.63
Scn4aQ9ER60 Pde4a-201ENSMUST00000003395 2524 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Scn4aQ9ER60 Cox4i2-201ENSMUST00000010020 727 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Scn4aQ9ER60 Rmdn1-202ENSMUST00000108253 806 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Scn4aQ9ER60 Gm14109-201ENSMUST00000118814 309 ntBASIC18.97■□□□□ 0.63
Scn4aQ9ER60 Gm16397-201ENSMUST00000122201 494 ntBASIC18.97■□□□□ 0.63
Scn4aQ9ER60 Gm14597-202ENSMUST00000129769 715 ntAPPRIS P5 TSL 3 BASIC18.97■□□□□ 0.63
Scn4aQ9ER60 1700030C14Rik-201ENSMUST00000139912 756 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Scn4aQ9ER60 Sap25-201ENSMUST00000166099 1101 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Scn4aQ9ER60 Dusp13-211ENSMUST00000183943 779 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
Scn4aQ9ER60 Ighv5-7-201ENSMUST00000192302 244 ntBASIC18.97■□□□□ 0.63
Scn4aQ9ER60 Gm38161-201ENSMUST00000195344 576 ntTSL 2 BASIC18.97■□□□□ 0.63
Scn4aQ9ER60 AC134869.3-201ENSMUST00000225581 343 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
Scn4aQ9ER60 Rpl18-201ENSMUST00000072503 679 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Scn4aQ9ER60 Lce1e-201ENSMUST00000090867 711 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Scn4aQ9ER60 F10-204ENSMUST00000128418 1395 ntTSL 5 BASIC18.97■□□□□ 0.63
Scn4aQ9ER60 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Scn4aQ9ER60 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Scn4aQ9ER60 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Scn4aQ9ER60 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Scn4aQ9ER60 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Scn4aQ9ER60 Aifm1-202ENSMUST00000114945 2221 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
Scn4aQ9ER60 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Scn4aQ9ER60 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Scn4aQ9ER60 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Scn4aQ9ER60 Tagln2-201ENSMUST00000111228 716 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
Scn4aQ9ER60 Wdr45-206ENSMUST00000116634 1250 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
Scn4aQ9ER60 Gm15131-201ENSMUST00000119124 595 ntBASIC18.97■□□□□ 0.63
Scn4aQ9ER60 Gm11637-201ENSMUST00000120601 592 ntBASIC18.97■□□□□ 0.63
Scn4aQ9ER60 Gm8856-201ENSMUST00000185254 1144 ntBASIC18.97■□□□□ 0.63
Scn4aQ9ER60 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
Scn4aQ9ER60 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Scn4aQ9ER60 Gm43423-201ENSMUST00000198390 2094 ntBASIC18.97■□□□□ 0.63
Scn4aQ9ER60 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Scn4aQ9ER60 Olfr763-201ENSMUST00000077460 2523 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
Scn4aQ9ER60 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Scn4aQ9ER60 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Scn4aQ9ER60 Gm45606-201ENSMUST00000209836 2795 ntBASIC18.96■□□□□ 0.63
Scn4aQ9ER60 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC18.96■□□□□ 0.63
Scn4aQ9ER60 Mutyh-201ENSMUST00000102699 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Scn4aQ9ER60 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Scn4aQ9ER60 Lrrfip2-214ENSMUST00000217117 1363 ntTSL 5 BASIC18.96■□□□□ 0.63
Scn4aQ9ER60 Rhbdl2-202ENSMUST00000106204 1120 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
Scn4aQ9ER60 Gm13408-201ENSMUST00000119822 798 ntBASIC18.96■□□□□ 0.63
Scn4aQ9ER60 Rpl28-ps1-201ENSMUST00000121497 414 ntBASIC18.96■□□□□ 0.63
Scn4aQ9ER60 Gm13935-201ENSMUST00000121859 798 ntBASIC18.96■□□□□ 0.63
Scn4aQ9ER60 Dnajb6-202ENSMUST00000012734 1024 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Scn4aQ9ER60 Gm10051-201ENSMUST00000145209 414 ntBASIC18.96■□□□□ 0.63
Scn4aQ9ER60 Fhit-206ENSMUST00000162278 981 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Scn4aQ9ER60 Gm18734-201ENSMUST00000172937 808 ntBASIC18.96■□□□□ 0.63
Scn4aQ9ER60 Pbx2-205ENSMUST00000183827 1186 ntTSL 5 BASIC18.96■□□□□ 0.63
Scn4aQ9ER60 Gm17330-201ENSMUST00000221047 165 ntBASIC18.96■□□□□ 0.63
Scn4aQ9ER60 Pcgf5-203ENSMUST00000224679 1269 ntAPPRIS P5 BASIC18.96■□□□□ 0.63
Scn4aQ9ER60 Prm3-201ENSMUST00000050864 410 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
Scn4aQ9ER60 Olfr283-201ENSMUST00000057386 1102 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
Scn4aQ9ER60 Slc36a1-202ENSMUST00000108867 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Scn4aQ9ER60 Mier2-201ENSMUST00000062855 2562 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
Scn4aQ9ER60 Poc1b-203ENSMUST00000159228 1799 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Scn4aQ9ER60 Mrap2-201ENSMUST00000049457 1931 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
Scn4aQ9ER60 A230072I06Rik-201ENSMUST00000098935 1839 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
Scn4aQ9ER60 Nadk-203ENSMUST00000105613 3152 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Scn4aQ9ER60 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC18.96■□□□□ 0.62
Scn4aQ9ER60 Cep295nl-202ENSMUST00000168100 1602 ntAPPRIS P1 BASIC18.96■□□□□ 0.62
Scn4aQ9ER60 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Scn4aQ9ER60 Gm20521-201ENSMUST00000134077 1245 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
Scn4aQ9ER60 Gm44405-201ENSMUST00000198952 126 ntBASIC18.95■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 10.7 ms