Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Gm6983-201ENSMUST00000214912 628 ntBASIC14.95□□□□□ -0.02
Clp1Q99LI9 Cd37-201ENSMUST00000033063 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Clp1Q99LI9 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Clp1Q99LI9 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Clp1Q99LI9 Gm13074-201ENSMUST00000124848 2735 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Clp1Q99LI9 Ftcd-201ENSMUST00000001183 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Clp1Q99LI9 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC14.95□□□□□ -0.02
Clp1Q99LI9 Ldha-214ENSMUST00000210815 1535 ntTSL 5 BASIC14.95□□□□□ -0.02
Clp1Q99LI9 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Clp1Q99LI9 Gm21038-201ENSMUST00000222205 1383 ntBASIC14.95□□□□□ -0.02
Clp1Q99LI9 Lpgat1-201ENSMUST00000110855 7233 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Clp1Q99LI9 Bckdha-201ENSMUST00000071329 1899 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Clp1Q99LI9 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Clp1Q99LI9 Ptprm-202ENSMUST00000223982 4802 ntAPPRIS P2 BASIC14.95□□□□□ -0.02
Clp1Q99LI9 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Clp1Q99LI9 Nfatc1-204ENSMUST00000170905 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Clp1Q99LI9 Ipo8-201ENSMUST00000048418 5360 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Clp1Q99LI9 St8sia6-201ENSMUST00000003509 7618 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Clp1Q99LI9 Fkbp10-201ENSMUST00000001595 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Clp1Q99LI9 Usp53-201ENSMUST00000090379 6185 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Clp1Q99LI9 Tifa-203ENSMUST00000164447 1538 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Clp1Q99LI9 Lims1-203ENSMUST00000105468 1205 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Clp1Q99LI9 Gm11557-201ENSMUST00000120200 1008 ntBASIC14.94□□□□□ -0.02
Clp1Q99LI9 Spcs2-ps-201ENSMUST00000122326 682 ntBASIC14.94□□□□□ -0.02
Clp1Q99LI9 Smim5-201ENSMUST00000131566 700 ntTSL 2 BASIC14.94□□□□□ -0.02
Clp1Q99LI9 Gm8927-201ENSMUST00000181978 981 ntBASIC14.94□□□□□ -0.02
Clp1Q99LI9 Selenoh-205ENSMUST00000189636 499 ntAPPRIS ALT2 TSL 3 BASIC14.94□□□□□ -0.02
Clp1Q99LI9 Fcrl1-204ENSMUST00000191666 925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Clp1Q99LI9 Gm42442-201ENSMUST00000197951 1133 ntBASIC14.94□□□□□ -0.02
Clp1Q99LI9 Gm15411-202ENSMUST00000201913 668 ntTSL 3 BASIC14.94□□□□□ -0.02
Clp1Q99LI9 Gm9299-201ENSMUST00000206392 1140 ntBASIC14.94□□□□□ -0.02
Clp1Q99LI9 Spata33-205ENSMUST00000212523 486 ntTSL 3 BASIC14.94□□□□□ -0.02
Clp1Q99LI9 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Clp1Q99LI9 Gm3222-201ENSMUST00000071282 990 ntBASIC14.94□□□□□ -0.02
Clp1Q99LI9 Ccdc33-202ENSMUST00000098681 1093 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Clp1Q99LI9 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Clp1Q99LI9 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
Clp1Q99LI9 Zmym3-201ENSMUST00000063577 6057 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Clp1Q99LI9 Nt5c2-202ENSMUST00000168536 3769 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Clp1Q99LI9 Syce1-201ENSMUST00000026553 1460 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Clp1Q99LI9 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Clp1Q99LI9 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Clp1Q99LI9 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Clp1Q99LI9 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
Clp1Q99LI9 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
Clp1Q99LI9 AC114543.1-201ENSMUST00000226451 1558 ntBASIC14.94□□□□□ -0.02
Clp1Q99LI9 Fer-202ENSMUST00000038080 2365 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Clp1Q99LI9 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Clp1Q99LI9 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
Clp1Q99LI9 Tnip2-201ENSMUST00000030991 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Clp1Q99LI9 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Clp1Q99LI9 Rps13-203ENSMUST00000205490 1317 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Clp1Q99LI9 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Clp1Q99LI9 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Clp1Q99LI9 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
Clp1Q99LI9 Hs3st3b1-201ENSMUST00000094103 4911 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Clp1Q99LI9 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
Clp1Q99LI9 Zfr2-201ENSMUST00000117798 3349 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
Clp1Q99LI9 Gpr108-201ENSMUST00000005975 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Clp1Q99LI9 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Clp1Q99LI9 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Clp1Q99LI9 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Clp1Q99LI9 Htr2c-203ENSMUST00000112831 809 ntTSL 3 BASIC14.93□□□□□ -0.02
Clp1Q99LI9 Gm13612-201ENSMUST00000119276 390 ntBASIC14.93□□□□□ -0.02
Clp1Q99LI9 Gm16342-201ENSMUST00000124025 1025 ntBASIC14.93□□□□□ -0.02
Clp1Q99LI9 Gm11723-201ENSMUST00000155505 466 ntTSL 3 BASIC14.93□□□□□ -0.02
Clp1Q99LI9 Gm29179-208ENSMUST00000190450 1137 ntTSL 5 BASIC14.93□□□□□ -0.02
Clp1Q99LI9 AC122459.1-201ENSMUST00000228373 885 ntBASIC14.93□□□□□ -0.02
Clp1Q99LI9 Rdh5-201ENSMUST00000026406 1258 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Clp1Q99LI9 Mal-201ENSMUST00000028853 486 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Clp1Q99LI9 4921530L21Rik-201ENSMUST00000045892 1161 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Clp1Q99LI9 Ppp1r14d-201ENSMUST00000076084 787 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Clp1Q99LI9 Knop1-205ENSMUST00000116280 5382 ntAPPRIS P3 TSL 5 BASIC14.93□□□□□ -0.02
Clp1Q99LI9 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Clp1Q99LI9 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Clp1Q99LI9 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Clp1Q99LI9 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC14.93□□□□□ -0.02
Clp1Q99LI9 Camsap1-202ENSMUST00000114167 7981 ntAPPRIS P2 TSL 5 BASIC14.93□□□□□ -0.02
Clp1Q99LI9 Camsap1-201ENSMUST00000091268 7978 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
Clp1Q99LI9 Rxra-203ENSMUST00000113934 1989 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Clp1Q99LI9 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
Clp1Q99LI9 Wnk2-207ENSMUST00000159559 6584 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
Clp1Q99LI9 Apoa4-201ENSMUST00000034585 1815 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Clp1Q99LI9 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Clp1Q99LI9 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Clp1Q99LI9 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
Clp1Q99LI9 Fam184a-201ENSMUST00000020003 4164 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
Clp1Q99LI9 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC14.92□□□□□ -0.02
Clp1Q99LI9 Crk-201ENSMUST00000017920 3642 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Clp1Q99LI9 Dhrs3-202ENSMUST00000105744 1226 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Clp1Q99LI9 Gm15371-201ENSMUST00000117057 784 ntBASIC14.92□□□□□ -0.02
Clp1Q99LI9 Gm15948-201ENSMUST00000150616 403 ntTSL 3 BASIC14.92□□□□□ -0.02
Clp1Q99LI9 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC14.92□□□□□ -0.02
Clp1Q99LI9 Gm37753-201ENSMUST00000192178 439 ntTSL 2 BASIC14.92□□□□□ -0.02
Clp1Q99LI9 Ighv1-51-201ENSMUST00000192903 354 ntBASIC14.92□□□□□ -0.02
Clp1Q99LI9 AC159896.2-201ENSMUST00000214753 269 ntBASIC14.92□□□□□ -0.02
Clp1Q99LI9 AC154319.1-201ENSMUST00000216330 312 ntBASIC14.92□□□□□ -0.02
Clp1Q99LI9 Gm11149-204ENSMUST00000216483 1275 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Clp1Q99LI9 Gm36634-201ENSMUST00000218356 1259 ntTSL 3 BASIC14.92□□□□□ -0.02
Clp1Q99LI9 AL589735.1-201ENSMUST00000224353 270 ntBASIC14.92□□□□□ -0.02
Retrieved 100 of 76,532 protein–RNA pairs in 45.6 ms