Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Mecp2-203ENSMUST00000123362 1675 ntTSL 5 BASIC19.46■□□□□ 0.71
Usp40Q8BWR4 Acr-201ENSMUST00000023295 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Usp40Q8BWR4 Ankrd44-210ENSMUST00000179030 6140 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Usp40Q8BWR4 Scube3-201ENSMUST00000043503 6699 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Usp40Q8BWR4 Gm15557-201ENSMUST00000109629 1380 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Usp40Q8BWR4 Racgap1-201ENSMUST00000023756 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Usp40Q8BWR4 Fermt2-201ENSMUST00000045905 3293 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Usp40Q8BWR4 Knop1-205ENSMUST00000116280 5382 ntAPPRIS P3 TSL 5 BASIC19.45■□□□□ 0.7
Usp40Q8BWR4 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Usp40Q8BWR4 Scamp1-201ENSMUST00000022197 4259 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Usp40Q8BWR4 Padi4-201ENSMUST00000026381 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Usp40Q8BWR4 Zxdc-202ENSMUST00000075117 4126 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
Usp40Q8BWR4 Tdrd5-201ENSMUST00000121146 3759 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Usp40Q8BWR4 Insc-201ENSMUST00000117543 2170 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Usp40Q8BWR4 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
Usp40Q8BWR4 Gm10369-201ENSMUST00000100641 1148 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Usp40Q8BWR4 Gm15755-201ENSMUST00000133698 659 ntTSL 3 BASIC19.45■□□□□ 0.7
Usp40Q8BWR4 Gm37667-201ENSMUST00000193103 752 ntTSL 5 BASIC19.45■□□□□ 0.7
Usp40Q8BWR4 9430085M18Rik-201ENSMUST00000198824 1178 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Usp40Q8BWR4 Pdpn-201ENSMUST00000030317 1817 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
Usp40Q8BWR4 Mlkl-201ENSMUST00000056157 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Usp40Q8BWR4 Map7d1-203ENSMUST00000122129 3249 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
Usp40Q8BWR4 Pex5-201ENSMUST00000035861 3139 ntAPPRIS P4 TSL 1 (best) BASIC19.45■□□□□ 0.7
Usp40Q8BWR4 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Usp40Q8BWR4 Dctn1-201ENSMUST00000077407 4118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Usp40Q8BWR4 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Usp40Q8BWR4 9930021J03Rik-204ENSMUST00000177155 6632 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Usp40Q8BWR4 Eci2-211ENSMUST00000171229 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Usp40Q8BWR4 Celf4-203ENSMUST00000223704 2492 ntAPPRIS ALT1 BASIC19.44■□□□□ 0.7
Usp40Q8BWR4 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Usp40Q8BWR4 Abhd3-202ENSMUST00000117726 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Usp40Q8BWR4 Krt36-201ENSMUST00000107416 1671 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Usp40Q8BWR4 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Usp40Q8BWR4 Gm11723-201ENSMUST00000155505 466 ntTSL 3 BASIC19.44■□□□□ 0.7
Usp40Q8BWR4 Kctd17-202ENSMUST00000159771 986 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
Usp40Q8BWR4 Gm17150-201ENSMUST00000165577 381 ntBASIC19.44■□□□□ 0.7
Usp40Q8BWR4 Ighv1-51-201ENSMUST00000192903 354 ntBASIC19.44■□□□□ 0.7
Usp40Q8BWR4 Gm32926-202ENSMUST00000215162 1176 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Usp40Q8BWR4 Gm11427-203ENSMUST00000215482 1203 ntTSL 5 BASIC19.44■□□□□ 0.7
Usp40Q8BWR4 Fkbp2-201ENSMUST00000070878 642 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Usp40Q8BWR4 Rhox2e-201ENSMUST00000072167 799 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Usp40Q8BWR4 Cmc2-201ENSMUST00000078589 523 ntTSL 2 BASIC19.44■□□□□ 0.7
Usp40Q8BWR4 Tex13c3-201ENSMUST00000089246 876 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Usp40Q8BWR4 Mir497b-201ENSMUST00000093601 125 ntBASIC19.44■□□□□ 0.7
Usp40Q8BWR4 S100a16-201ENSMUST00000098910 1123 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Usp40Q8BWR4 Ssfa2-202ENSMUST00000111785 5168 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Usp40Q8BWR4 Rspo4-201ENSMUST00000042217 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Usp40Q8BWR4 Tfap2c-201ENSMUST00000030391 2838 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Usp40Q8BWR4 Fh1-201ENSMUST00000027810 2636 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Usp40Q8BWR4 Fbln7-201ENSMUST00000028864 2905 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Usp40Q8BWR4 Mvk-202ENSMUST00000112239 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Usp40Q8BWR4 Cnot7-201ENSMUST00000034012 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Usp40Q8BWR4 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Usp40Q8BWR4 Ckmt2-201ENSMUST00000022122 1486 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Usp40Q8BWR4 Gm29358-201ENSMUST00000186510 1734 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Usp40Q8BWR4 Abhd14b-201ENSMUST00000048527 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Usp40Q8BWR4 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
Usp40Q8BWR4 Ism2-202ENSMUST00000125733 2526 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
Usp40Q8BWR4 Dhrs3-202ENSMUST00000105744 1226 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Usp40Q8BWR4 Ccdc169-203ENSMUST00000118963 740 ntTSL 3 BASIC19.43■□□□□ 0.7
Usp40Q8BWR4 Sec11a-203ENSMUST00000119980 903 ntTSL 2 BASIC19.43■□□□□ 0.7
Usp40Q8BWR4 C430049B03Rik-201ENSMUST00000129764 868 ntTSL 3 BASIC19.43■□□□□ 0.7
Usp40Q8BWR4 Gm17634-201ENSMUST00000181383 1285 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Usp40Q8BWR4 Aqp10-ps-201ENSMUST00000199555 611 ntBASIC19.43■□□□□ 0.7
Usp40Q8BWR4 Gm19078-201ENSMUST00000206311 727 ntBASIC19.43■□□□□ 0.7
Usp40Q8BWR4 Tdrp-206ENSMUST00000210414 323 ntTSL 3 BASIC19.43■□□□□ 0.7
Usp40Q8BWR4 Ccdc169-202ENSMUST00000061099 887 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
Usp40Q8BWR4 Gm9856-201ENSMUST00000217077 2578 ntBASIC19.43■□□□□ 0.7
Usp40Q8BWR4 Gnb5-202ENSMUST00000213990 1803 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Usp40Q8BWR4 Gm17108-201ENSMUST00000168625 2877 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Usp40Q8BWR4 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
Usp40Q8BWR4 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
Usp40Q8BWR4 Ociad1-202ENSMUST00000071081 1311 ntTSL 3 BASIC19.43■□□□□ 0.7
Usp40Q8BWR4 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
Usp40Q8BWR4 Slc35g3-201ENSMUST00000102586 1618 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Usp40Q8BWR4 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Usp40Q8BWR4 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Usp40Q8BWR4 Gm44645-201ENSMUST00000205492 1653 ntBASIC19.43■□□□□ 0.7
Usp40Q8BWR4 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Usp40Q8BWR4 Pde4d-203ENSMUST00000117420 1955 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Usp40Q8BWR4 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Usp40Q8BWR4 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Usp40Q8BWR4 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC19.42■□□□□ 0.7
Usp40Q8BWR4 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC19.42■□□□□ 0.7
Usp40Q8BWR4 Snrk-201ENSMUST00000118886 4811 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Usp40Q8BWR4 Cd99l2-204ENSMUST00000114587 973 ntAPPRIS ALT2 TSL 3 BASIC19.42■□□□□ 0.7
Usp40Q8BWR4 Gm13829-201ENSMUST00000119600 138 ntBASIC19.42■□□□□ 0.7
Usp40Q8BWR4 Dusp13-203ENSMUST00000120956 1070 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Usp40Q8BWR4 Gm15821-201ENSMUST00000121995 1210 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Usp40Q8BWR4 1700047K16Rik-201ENSMUST00000145068 886 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Usp40Q8BWR4 Cmc4-203ENSMUST00000149863 507 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
Usp40Q8BWR4 Lcmt1-204ENSMUST00000206574 1286 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
Usp40Q8BWR4 Cradd-202ENSMUST00000217809 1115 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Usp40Q8BWR4 Med10-201ENSMUST00000022089 913 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Usp40Q8BWR4 Wdr83-201ENSMUST00000093357 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Usp40Q8BWR4 6430531B16Rik-201ENSMUST00000097970 1161 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
Usp40Q8BWR4 Olfr554-201ENSMUST00000098221 954 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Usp40Q8BWR4 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Usp40Q8BWR4 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Usp40Q8BWR4 Trmt1-201ENSMUST00000001974 2567 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 26.2 ms