Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Trim56Q80VI1 Midn-202ENSMUST00000099492 3597 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Trim56Q80VI1 Fbxo44-205ENSMUST00000151127 1403 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Trim56Q80VI1 Gm26847-201ENSMUST00000180407 2109 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Trim56Q80VI1 Tfap2c-201ENSMUST00000030391 2838 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim56Q80VI1 Klhl9-201ENSMUST00000094993 4174 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
Trim56Q80VI1 Casc4-203ENSMUST00000089915 3475 ntTSL 2 BASIC16.79■□□□□ 0.28
Trim56Q80VI1 Marveld3-202ENSMUST00000051430 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim56Q80VI1 Art3-205ENSMUST00000120193 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim56Q80VI1 Bscl2-201ENSMUST00000086058 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim56Q80VI1 Cfl1-202ENSMUST00000209469 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim56Q80VI1 Mospd3-202ENSMUST00000111007 1318 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim56Q80VI1 Nt5c3b-202ENSMUST00000092689 1344 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Trim56Q80VI1 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim56Q80VI1 Nfe2-205ENSMUST00000133600 1605 ntTSL 5 BASIC16.79■□□□□ 0.28
Trim56Q80VI1 Gm14493-201ENSMUST00000141174 543 ntTSL 5 BASIC16.79■□□□□ 0.28
Trim56Q80VI1 Gm5108-201ENSMUST00000177891 543 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim56Q80VI1 Agrp-202ENSMUST00000194091 734 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
Trim56Q80VI1 Ighv8-14-201ENSMUST00000196781 358 ntBASIC16.79■□□□□ 0.28
Trim56Q80VI1 Gm44608-201ENSMUST00000206827 855 ntBASIC16.79■□□□□ 0.28
Trim56Q80VI1 Saa2-203ENSMUST00000210769 652 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim56Q80VI1 AC132863.2-201ENSMUST00000226643 799 ntBASIC16.79■□□□□ 0.28
Trim56Q80VI1 Saa2-201ENSMUST00000075982 606 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim56Q80VI1 Larp1b-205ENSMUST00000191805 1581 ntAPPRIS P2 TSL 5 BASIC16.79■□□□□ 0.28
Trim56Q80VI1 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim56Q80VI1 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim56Q80VI1 Zfp296-201ENSMUST00000108453 1530 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim56Q80VI1 Syt10-201ENSMUST00000029441 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim56Q80VI1 Dnajb14-201ENSMUST00000090178 9477 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim56Q80VI1 Txndc11-203ENSMUST00000118679 3523 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Trim56Q80VI1 Tmem201-201ENSMUST00000054459 4631 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
Trim56Q80VI1 Ttc24-201ENSMUST00000050258 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trim56Q80VI1 Rrp1-201ENSMUST00000062678 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim56Q80VI1 Anks1-203ENSMUST00000114842 5610 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim56Q80VI1 Alx1-208ENSMUST00000219194 1695 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Trim56Q80VI1 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim56Q80VI1 Palm-201ENSMUST00000046945 2651 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim56Q80VI1 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Trim56Q80VI1 Procr-201ENSMUST00000029140 1597 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim56Q80VI1 Mus81-202ENSMUST00000124334 2067 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim56Q80VI1 Pebp1-202ENSMUST00000111973 779 ntTSL 3 BASIC16.78■□□□□ 0.28
Trim56Q80VI1 Gm14057-201ENSMUST00000120631 482 ntBASIC16.78■□□□□ 0.28
Trim56Q80VI1 4930417O22Rik-201ENSMUST00000123249 1184 ntTSL 2 BASIC16.78■□□□□ 0.28
Trim56Q80VI1 Cdpf1-202ENSMUST00000125947 706 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
Trim56Q80VI1 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Trim56Q80VI1 Dap-204ENSMUST00000186425 597 ntTSL 3 BASIC16.78■□□□□ 0.28
Trim56Q80VI1 Gm29667-201ENSMUST00000190817 490 ntBASIC16.78■□□□□ 0.28
Trim56Q80VI1 AC238811.1-201ENSMUST00000225302 441 ntBASIC16.78■□□□□ 0.28
Trim56Q80VI1 Pde8a-201ENSMUST00000026672 3802 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim56Q80VI1 Mlf1-202ENSMUST00000077916 1114 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim56Q80VI1 2900055J20Rik-201ENSMUST00000096572 723 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Trim56Q80VI1 Pctp-201ENSMUST00000020864 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim56Q80VI1 AW822073-202ENSMUST00000204003 1959 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Trim56Q80VI1 Ldoc1-201ENSMUST00000075983 1459 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Trim56Q80VI1 Limk1-201ENSMUST00000015137 3331 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim56Q80VI1 Tdrd12-205ENSMUST00000205407 1412 ntTSL 5 BASIC16.78■□□□□ 0.28
Trim56Q80VI1 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC16.78■□□□□ 0.28
Trim56Q80VI1 Marveld2-203ENSMUST00000168772 1888 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Trim56Q80VI1 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trim56Q80VI1 Traf1-201ENSMUST00000028234 2069 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
Trim56Q80VI1 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Trim56Q80VI1 Aifm2-202ENSMUST00000080099 1329 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Trim56Q80VI1 Neto1-201ENSMUST00000058829 3531 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Trim56Q80VI1 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
Trim56Q80VI1 Pfkfb3-205ENSMUST00000114845 1971 ntTSL 5 BASIC16.77■□□□□ 0.28
Trim56Q80VI1 Eef1akmt4-201ENSMUST00000115522 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Trim56Q80VI1 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC16.77■□□□□ 0.28
Trim56Q80VI1 Gm29585-201ENSMUST00000185270 514 ntTSL 5 BASIC16.77■□□□□ 0.28
Trim56Q80VI1 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Trim56Q80VI1 Gm42196-201ENSMUST00000209618 730 ntTSL 5 BASIC16.77■□□□□ 0.28
Trim56Q80VI1 Gm7390-201ENSMUST00000212452 1216 ntBASIC16.77■□□□□ 0.28
Trim56Q80VI1 AC125206.2-201ENSMUST00000217454 574 ntBASIC16.77■□□□□ 0.28
Trim56Q80VI1 AC139350.3-201ENSMUST00000226151 420 ntBASIC16.77■□□□□ 0.28
Trim56Q80VI1 Spsb2-201ENSMUST00000047760 1213 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Trim56Q80VI1 Cxcl17-201ENSMUST00000074040 761 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
Trim56Q80VI1 Mpp4-201ENSMUST00000066374 2344 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
Trim56Q80VI1 Mpp4-202ENSMUST00000078874 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Trim56Q80VI1 Gnas-210ENSMUST00000109095 2059 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Trim56Q80VI1 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
Trim56Q80VI1 Fntb-206ENSMUST00000137826 1442 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
Trim56Q80VI1 Adra1b-204ENSMUST00000167574 3047 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Trim56Q80VI1 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Trim56Q80VI1 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Trim56Q80VI1 Psmd5-201ENSMUST00000028225 4397 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Trim56Q80VI1 Syt17-204ENSMUST00000203796 2957 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
Trim56Q80VI1 Gm5934-201ENSMUST00000120734 2588 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
Trim56Q80VI1 Gtf2h4-207ENSMUST00000160734 1569 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
Trim56Q80VI1 2810474O19Rik-209ENSMUST00000189932 5269 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trim56Q80VI1 A230077H06Rik-201ENSMUST00000188579 2918 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Trim56Q80VI1 Csnk1d-201ENSMUST00000018274 3675 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trim56Q80VI1 Fam122b-203ENSMUST00000114841 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trim56Q80VI1 Stard5-201ENSMUST00000075418 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trim56Q80VI1 Psap-202ENSMUST00000105465 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trim56Q80VI1 Paqr9-201ENSMUST00000079597 8367 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
Trim56Q80VI1 Rbbp7-201ENSMUST00000033720 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trim56Q80VI1 Serpinh1-201ENSMUST00000094154 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trim56Q80VI1 Trp73-201ENSMUST00000097762 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trim56Q80VI1 Knop1-205ENSMUST00000116280 5382 ntAPPRIS P3 TSL 5 BASIC16.76■□□□□ 0.27
Trim56Q80VI1 Prickle1-201ENSMUST00000048982 4085 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trim56Q80VI1 Cd72-202ENSMUST00000098104 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 31.5 ms