Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Rita1-201ENSMUST00000031599 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trim28Q62318 Ap4b1-204ENSMUST00000106824 2412 ntTSL 5 BASIC18.38■□□□□ 0.53
Trim28Q62318 Dzip3-201ENSMUST00000114516 3331 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trim28Q62318 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim28Q62318 Cyp4f37-201ENSMUST00000077639 2642 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim28Q62318 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim28Q62318 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim28Q62318 Phgdh-201ENSMUST00000065793 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim28Q62318 Spg20-201ENSMUST00000044116 3770 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim28Q62318 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim28Q62318 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim28Q62318 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim28Q62318 Gm15806-201ENSMUST00000120696 955 ntBASIC18.37■□□□□ 0.53
Trim28Q62318 Gm15755-201ENSMUST00000133698 659 ntTSL 3 BASIC18.37■□□□□ 0.53
Trim28Q62318 Cpne8-201ENSMUST00000014777 697 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Trim28Q62318 Gm27772-201ENSMUST00000184900 187 ntBASIC18.37■□□□□ 0.53
Trim28Q62318 Gm11149-204ENSMUST00000216483 1275 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Trim28Q62318 Med10-201ENSMUST00000022089 913 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim28Q62318 AC150560.1-201ENSMUST00000227731 1187 ntBASIC18.37■□□□□ 0.53
Trim28Q62318 Emc4-201ENSMUST00000028551 983 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim28Q62318 Fgfr1op2-201ENSMUST00000037836 687 ntTSL 3 BASIC18.37■□□□□ 0.53
Trim28Q62318 Klhl26-202ENSMUST00000166976 2734 ntTSL 2 BASIC18.37■□□□□ 0.53
Trim28Q62318 Car6-202ENSMUST00000105683 1460 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Trim28Q62318 AC161252.3-201ENSMUST00000225465 1549 ntBASIC18.37■□□□□ 0.53
Trim28Q62318 Ece2-201ENSMUST00000003898 3152 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim28Q62318 Mettl11b-201ENSMUST00000159679 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim28Q62318 Rtn4-201ENSMUST00000060992 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim28Q62318 Aldh3b1-201ENSMUST00000051803 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim28Q62318 Irak1-206ENSMUST00000114354 3835 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim28Q62318 Slc7a7-202ENSMUST00000195970 2057 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Trim28Q62318 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim28Q62318 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim28Q62318 Adal-204ENSMUST00000110665 2356 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Trim28Q62318 Enpp1-203ENSMUST00000135846 2721 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim28Q62318 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim28Q62318 Sybu-209ENSMUST00000228639 4113 ntBASIC18.36■□□□□ 0.53
Trim28Q62318 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
Trim28Q62318 Knop1-203ENSMUST00000106549 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim28Q62318 Etfrf1-206ENSMUST00000111725 872 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
Trim28Q62318 Maged2-203ENSMUST00000112699 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim28Q62318 Cfp-201ENSMUST00000001156 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim28Q62318 Gm11478-201ENSMUST00000117851 599 ntBASIC18.36■□□□□ 0.53
Trim28Q62318 H2afb1-201ENSMUST00000122446 348 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
Trim28Q62318 Rasal3-204ENSMUST00000135618 3293 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Trim28Q62318 Gm12503-201ENSMUST00000146576 3127 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Trim28Q62318 9130410C08Rik-201ENSMUST00000155499 1088 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Trim28Q62318 Gm12840-201ENSMUST00000156081 627 ntTSL 5 BASIC18.36■□□□□ 0.53
Trim28Q62318 BC023719-201ENSMUST00000174728 978 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Trim28Q62318 Gprc5c-208ENSMUST00000177952 1809 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim28Q62318 Gm26565-201ENSMUST00000181642 1968 ntTSL 5 BASIC18.36■□□□□ 0.53
Trim28Q62318 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Trim28Q62318 Tm2d3-207ENSMUST00000206517 905 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Trim28Q62318 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Trim28Q62318 Gm5035-201ENSMUST00000215581 927 ntBASIC18.36■□□□□ 0.53
Trim28Q62318 R3hcc1-206ENSMUST00000216152 1467 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim28Q62318 Asb2-201ENSMUST00000021617 2690 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim28Q62318 1700067P10Rik-201ENSMUST00000022028 794 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim28Q62318 Gm21038-201ENSMUST00000222205 1383 ntBASIC18.36■□□□□ 0.53
Trim28Q62318 Trf-201ENSMUST00000035158 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim28Q62318 Rragb-201ENSMUST00000039720 2258 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim28Q62318 Rpl13a-ps1-201ENSMUST00000071866 612 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
Trim28Q62318 Olfr1214-201ENSMUST00000099804 936 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
Trim28Q62318 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim28Q62318 Axin1-201ENSMUST00000074370 3777 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim28Q62318 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim28Q62318 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim28Q62318 Pcyox1l-201ENSMUST00000025472 2017 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim28Q62318 Mocs2-208ENSMUST00000166176 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim28Q62318 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Trim28Q62318 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim28Q62318 Adamts19-201ENSMUST00000052907 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim28Q62318 Mon1a-202ENSMUST00000191906 2821 ntTSL 2 BASIC18.35■□□□□ 0.53
Trim28Q62318 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC18.35■□□□□ 0.53
Trim28Q62318 Capns2-201ENSMUST00000104947 1005 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Trim28Q62318 Tmem53-202ENSMUST00000106433 913 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Trim28Q62318 Klk12-201ENSMUST00000014063 924 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim28Q62318 Kctd17-202ENSMUST00000159771 986 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
Trim28Q62318 Srgn-201ENSMUST00000020271 938 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim28Q62318 Gm8463-201ENSMUST00000208573 613 ntBASIC18.35■□□□□ 0.53
Trim28Q62318 Tdrp-206ENSMUST00000210414 323 ntTSL 3 BASIC18.35■□□□□ 0.53
Trim28Q62318 Hdhd3-201ENSMUST00000037820 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim28Q62318 Pid1-207ENSMUST00000177458 2521 ntTSL 2 BASIC18.35■□□□□ 0.53
Trim28Q62318 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim28Q62318 Lmntd2-202ENSMUST00000170841 2077 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim28Q62318 Gm12020-201ENSMUST00000119030 2042 ntBASIC18.35■□□□□ 0.53
Trim28Q62318 Pef1-202ENSMUST00000118199 1915 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Trim28Q62318 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim28Q62318 Nat8f7-201ENSMUST00000160534 1822 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Trim28Q62318 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim28Q62318 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim28Q62318 Cadm2-203ENSMUST00000120898 2768 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Trim28Q62318 Traf1-201ENSMUST00000028234 2069 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Trim28Q62318 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim28Q62318 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim28Q62318 Snrnp27-202ENSMUST00000113683 1005 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Trim28Q62318 Tmem219-202ENSMUST00000119781 1118 ntTSL 5 BASIC18.34■□□□□ 0.53
Trim28Q62318 Gm15948-201ENSMUST00000150616 403 ntTSL 3 BASIC18.34■□□□□ 0.53
Trim28Q62318 Ucma-204ENSMUST00000167607 785 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Trim28Q62318 Gm18187-201ENSMUST00000196476 984 ntBASIC18.34■□□□□ 0.53
Trim28Q62318 Ndufa4l2-201ENSMUST00000035735 934 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 28.1 ms