Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gm22175-201ENSMUST00000175007 78 ntBASIC15.27■□□□□ 0.04
Upf3bQ3ULL6 Gm28277-201ENSMUST00000187450 885 ntTSL 3 BASIC15.27■□□□□ 0.04
Upf3bQ3ULL6 AC149588.3-201ENSMUST00000227515 150 ntBASIC15.27■□□□□ 0.04
Upf3bQ3ULL6 Gm5089-201ENSMUST00000081580 2008 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Upf3bQ3ULL6 Acss1-201ENSMUST00000028944 3618 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Upf3bQ3ULL6 Slc27a1-201ENSMUST00000034267 2795 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Upf3bQ3ULL6 Iqcj-201ENSMUST00000063263 1579 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Upf3bQ3ULL6 Grin2a-202ENSMUST00000115835 5023 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
Upf3bQ3ULL6 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC15.27■□□□□ 0.03
Upf3bQ3ULL6 Grik5-201ENSMUST00000003468 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Upf3bQ3ULL6 Rabggta-202ENSMUST00000163889 1886 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Upf3bQ3ULL6 Fam163b-201ENSMUST00000151224 2959 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Upf3bQ3ULL6 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Upf3bQ3ULL6 Kcnc2-201ENSMUST00000092175 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Upf3bQ3ULL6 Hsd17b14-201ENSMUST00000107752 1400 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Upf3bQ3ULL6 Trmt1-205ENSMUST00000125370 2114 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Upf3bQ3ULL6 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Upf3bQ3ULL6 Renbp-201ENSMUST00000114379 1318 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Upf3bQ3ULL6 AC154767.3-201ENSMUST00000225150 1342 ntBASIC15.26■□□□□ 0.03
Upf3bQ3ULL6 Cdx4-201ENSMUST00000033689 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Upf3bQ3ULL6 Elmod1-201ENSMUST00000048409 2605 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Upf3bQ3ULL6 Myh14-201ENSMUST00000048102 6457 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Upf3bQ3ULL6 Ttll5-203ENSMUST00000095536 4150 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
Upf3bQ3ULL6 Plekhb1-207ENSMUST00000116287 1911 ntAPPRIS ALT1 TSL 3 BASIC15.26■□□□□ 0.03
Upf3bQ3ULL6 Gm12882-201ENSMUST00000121696 517 ntBASIC15.26■□□□□ 0.03
Upf3bQ3ULL6 Nudcd2-203ENSMUST00000127382 727 ntTSL 2 BASIC15.26■□□□□ 0.03
Upf3bQ3ULL6 Gm27631-201ENSMUST00000184163 466 ntBASIC15.26■□□□□ 0.03
Upf3bQ3ULL6 AC139382.1-201ENSMUST00000221402 498 ntBASIC15.26■□□□□ 0.03
Upf3bQ3ULL6 Klk5-201ENSMUST00000048444 1239 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Upf3bQ3ULL6 Rtl8c-201ENSMUST00000063384 401 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Upf3bQ3ULL6 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Upf3bQ3ULL6 Phldb1-212ENSMUST00000138356 5600 ntTSL 5 BASIC15.26■□□□□ 0.03
Upf3bQ3ULL6 Ids-201ENSMUST00000101509 4972 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Upf3bQ3ULL6 Rsbn1l-201ENSMUST00000036489 5550 ntAPPRIS P2 TSL 5 BASIC15.26■□□□□ 0.03
Upf3bQ3ULL6 Celf4-203ENSMUST00000223704 2492 ntAPPRIS ALT1 BASIC15.26■□□□□ 0.03
Upf3bQ3ULL6 Olfr718-ps1-203ENSMUST00000215102 4913 ntAPPRIS P5 TSL 5 BASIC15.26■□□□□ 0.03
Upf3bQ3ULL6 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Upf3bQ3ULL6 Gtf2h1-201ENSMUST00000006774 2736 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Upf3bQ3ULL6 Sgtb-201ENSMUST00000044385 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Upf3bQ3ULL6 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Upf3bQ3ULL6 Cfl1-202ENSMUST00000209469 2354 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Upf3bQ3ULL6 Gm14812-201ENSMUST00000156494 1794 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Upf3bQ3ULL6 Hyou1-201ENSMUST00000066601 4432 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Upf3bQ3ULL6 Evc-201ENSMUST00000031005 4325 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Upf3bQ3ULL6 Map3k5-202ENSMUST00000120259 4289 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Upf3bQ3ULL6 Htr3a-202ENSMUST00000217289 1987 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Upf3bQ3ULL6 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Upf3bQ3ULL6 Ino80-202ENSMUST00000110808 3928 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Upf3bQ3ULL6 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Upf3bQ3ULL6 Kcnq2-202ENSMUST00000049792 2920 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Upf3bQ3ULL6 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Upf3bQ3ULL6 Fh1-201ENSMUST00000027810 2636 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Upf3bQ3ULL6 Rnf167-201ENSMUST00000037534 1833 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Upf3bQ3ULL6 Wbp2-201ENSMUST00000074628 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Upf3bQ3ULL6 Wdfy3-206ENSMUST00000174698 3858 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Upf3bQ3ULL6 Slc8a3-201ENSMUST00000064594 4379 ntAPPRIS ALT1 TSL 5 BASIC15.25■□□□□ 0.03
Upf3bQ3ULL6 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Upf3bQ3ULL6 Rspry1-207ENSMUST00000212729 2800 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Upf3bQ3ULL6 Nr2f1-202ENSMUST00000125176 841 ntTSL 5 BASIC15.25■□□□□ 0.03
Upf3bQ3ULL6 Vdac2-209ENSMUST00000173456 956 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Upf3bQ3ULL6 Styxl1-207ENSMUST00000177559 1236 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Upf3bQ3ULL6 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Upf3bQ3ULL6 Gm28630-201ENSMUST00000187806 498 ntBASIC15.25■□□□□ 0.03
Upf3bQ3ULL6 Gm38182-203ENSMUST00000192984 993 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Upf3bQ3ULL6 Pcdhgc5-204ENSMUST00000193941 593 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Upf3bQ3ULL6 Mpv17-203ENSMUST00000200833 1171 ntTSL 5 BASIC15.25■□□□□ 0.03
Upf3bQ3ULL6 Ins2-209ENSMUST00000210288 918 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Upf3bQ3ULL6 Gm45453-201ENSMUST00000211758 853 ntBASIC15.25■□□□□ 0.03
Upf3bQ3ULL6 Trib2-204ENSMUST00000221518 1192 ntTSL 5 BASIC15.25■□□□□ 0.03
Upf3bQ3ULL6 AC090659.2-201ENSMUST00000225378 1186 ntBASIC15.25■□□□□ 0.03
Upf3bQ3ULL6 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Upf3bQ3ULL6 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Upf3bQ3ULL6 Slc43a1-201ENSMUST00000028469 2539 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Upf3bQ3ULL6 Gm26546-201ENSMUST00000181000 4276 ntTSL 5 BASIC15.25■□□□□ 0.03
Upf3bQ3ULL6 Dlg1-201ENSMUST00000023454 3725 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Upf3bQ3ULL6 Ankrd6-202ENSMUST00000084748 4354 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Upf3bQ3ULL6 Myo1c-201ENSMUST00000069057 4547 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Upf3bQ3ULL6 Sacs-201ENSMUST00000089394 3345 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Upf3bQ3ULL6 Sirpa-202ENSMUST00000099113 3342 ntTSL 3 BASIC15.25■□□□□ 0.03
Upf3bQ3ULL6 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Upf3bQ3ULL6 Olfml2a-201ENSMUST00000057279 5579 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Upf3bQ3ULL6 Cpne1-203ENSMUST00000109608 3492 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Upf3bQ3ULL6 Pigg-203ENSMUST00000119014 4573 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Upf3bQ3ULL6 Tmod2-207ENSMUST00000215462 1564 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Upf3bQ3ULL6 Twsg1-201ENSMUST00000024906 4046 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Upf3bQ3ULL6 Akap17b-201ENSMUST00000051906 6003 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Upf3bQ3ULL6 Slc41a1-201ENSMUST00000086559 4697 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Upf3bQ3ULL6 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC15.24■□□□□ 0.03
Upf3bQ3ULL6 Pafah1b1-202ENSMUST00000102520 5789 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Upf3bQ3ULL6 Tdrd5-201ENSMUST00000121146 3759 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Upf3bQ3ULL6 Fars2-208ENSMUST00000224611 1750 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Upf3bQ3ULL6 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Upf3bQ3ULL6 1110008P14Rik-202ENSMUST00000146423 2618 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Upf3bQ3ULL6 Nfic-207ENSMUST00000221817 1531 ntTSL 5 BASIC15.24■□□□□ 0.03
Upf3bQ3ULL6 Slc18b1-206ENSMUST00000179321 2843 ntTSL 5 BASIC15.24■□□□□ 0.03
Upf3bQ3ULL6 Rara-203ENSMUST00000107474 2380 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Upf3bQ3ULL6 Bag6-201ENSMUST00000025250 3858 ntAPPRIS P3 TSL 5 BASIC15.24■□□□□ 0.03
Upf3bQ3ULL6 Slc4a4-207ENSMUST00000148750 7931 ntAPPRIS P3 TSL 5 BASIC15.24■□□□□ 0.03
Upf3bQ3ULL6 Zdhhc23-202ENSMUST00000165648 1278 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Upf3bQ3ULL6 AA619741-201ENSMUST00000195095 646 ntBASIC15.24■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 26.8 ms