Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
RaraP11416 Lce1f-201ENSMUST00000047153 728 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RaraP11416 Gm13055-201ENSMUST00000127875 1961 ntTSL 5 BASIC15.41■□□□□ 0.06
RaraP11416 Tpk1-201ENSMUST00000067888 2671 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RaraP11416 Nos1ap-202ENSMUST00000160456 3022 ntAPPRIS P2 TSL 5 BASIC15.41■□□□□ 0.06
RaraP11416 Gm2420-202ENSMUST00000202224 2249 ntBASIC15.41■□□□□ 0.06
RaraP11416 Grid2-201ENSMUST00000095852 5860 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RaraP11416 Gm42769-201ENSMUST00000198576 1659 ntBASIC15.41■□□□□ 0.06
RaraP11416 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RaraP11416 Enox1-201ENSMUST00000022589 3142 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
RaraP11416 Osbpl10-204ENSMUST00000182384 2158 ntTSL 5 BASIC15.41■□□□□ 0.06
RaraP11416 Rcan1-201ENSMUST00000023672 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RaraP11416 Zfp574-202ENSMUST00000179556 4140 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RaraP11416 Pam-202ENSMUST00000097625 4102 ntAPPRIS P2 TSL 5 BASIC15.41■□□□□ 0.06
RaraP11416 Ebf4-201ENSMUST00000110286 2670 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
RaraP11416 Zfp316-202ENSMUST00000161448 6891 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RaraP11416 Fut11-201ENSMUST00000048016 4163 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RaraP11416 Cep131-201ENSMUST00000106227 3578 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
RaraP11416 Cep131-202ENSMUST00000106229 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
RaraP11416 Cep131-207ENSMUST00000180242 3581 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
RaraP11416 Hoxc4-201ENSMUST00000100164 1983 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RaraP11416 Dennd4c-201ENSMUST00000045512 5648 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
RaraP11416 BC026585-201ENSMUST00000046743 1618 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RaraP11416 Cul7-201ENSMUST00000043464 5530 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RaraP11416 Pfkfb3-203ENSMUST00000100411 2008 ntTSL 5 BASIC15.4■□□□□ 0.06
RaraP11416 Pigg-203ENSMUST00000119014 4573 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
RaraP11416 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC15.4■□□□□ 0.06
RaraP11416 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC15.4■□□□□ 0.06
RaraP11416 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
RaraP11416 Olfr572-203ENSMUST00000215782 1233 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
RaraP11416 AC090659.1-201ENSMUST00000224334 768 ntBASIC15.4■□□□□ 0.06
RaraP11416 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RaraP11416 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RaraP11416 Mrps36-202ENSMUST00000078573 571 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RaraP11416 Serpinh1-205ENSMUST00000208119 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RaraP11416 Ldlrap1-201ENSMUST00000037828 6549 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RaraP11416 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RaraP11416 Zbtb25-204ENSMUST00000176278 1672 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RaraP11416 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RaraP11416 Arhgap4-204ENSMUST00000114406 2749 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
RaraP11416 Ngef-201ENSMUST00000027477 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
RaraP11416 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RaraP11416 Cuedc2-201ENSMUST00000051234 1833 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
RaraP11416 Peli1-201ENSMUST00000093290 3514 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RaraP11416 Sf3a1-201ENSMUST00000002198 4920 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RaraP11416 Slc39a2-201ENSMUST00000047726 2334 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RaraP11416 Krt20-201ENSMUST00000017743 1927 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RaraP11416 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
RaraP11416 Adam23-205ENSMUST00000114107 6110 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
RaraP11416 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
RaraP11416 Gars-201ENSMUST00000003572 2380 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RaraP11416 Myo19-202ENSMUST00000093969 4091 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
RaraP11416 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
RaraP11416 Rps27l-203ENSMUST00000127896 575 ntTSL 5 BASIC15.39■□□□□ 0.05
RaraP11416 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC15.39■□□□□ 0.05
RaraP11416 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RaraP11416 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RaraP11416 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC15.39■□□□□ 0.05
RaraP11416 Prok2-202ENSMUST00000032152 1423 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
RaraP11416 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
RaraP11416 Rnf10-203ENSMUST00000112097 3476 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
RaraP11416 Tmed5-202ENSMUST00000061203 2194 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
RaraP11416 Eef1d-204ENSMUST00000089681 2152 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
RaraP11416 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
RaraP11416 Kcnk13-202ENSMUST00000160413 3061 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RaraP11416 Steap2-201ENSMUST00000015797 3657 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RaraP11416 Gm11611-201ENSMUST00000134289 1326 ntTSL 3 BASIC15.39■□□□□ 0.05
RaraP11416 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RaraP11416 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
RaraP11416 Gnai1-201ENSMUST00000074694 3135 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RaraP11416 Sh2b3-202ENSMUST00000086310 4195 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
RaraP11416 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
RaraP11416 Rxra-203ENSMUST00000113934 1989 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
RaraP11416 Klhdc4-210ENSMUST00000174717 1662 ntTSL 5 BASIC15.38■□□□□ 0.05
RaraP11416 Pprc1-202ENSMUST00000099392 3956 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
RaraP11416 Pgm5-201ENSMUST00000047666 3239 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
RaraP11416 Kcnk13-204ENSMUST00000177549 3075 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
RaraP11416 Olfr718-ps1-203ENSMUST00000215102 4913 ntAPPRIS P5 TSL 5 BASIC15.38■□□□□ 0.05
RaraP11416 Tmem220-201ENSMUST00000061786 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
RaraP11416 Gnb4-201ENSMUST00000108234 2510 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
RaraP11416 Ahctf1-201ENSMUST00000027768 8506 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
RaraP11416 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
RaraP11416 Pex11g-202ENSMUST00000111081 666 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
RaraP11416 Gm12260-201ENSMUST00000122447 411 ntBASIC15.38■□□□□ 0.05
RaraP11416 Atcayos-202ENSMUST00000129950 1117 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
RaraP11416 Mir8117-201ENSMUST00000184773 107 ntBASIC15.38■□□□□ 0.05
RaraP11416 Ndufs6-203ENSMUST00000222930 512 ntTSL 3 BASIC15.38■□□□□ 0.05
RaraP11416 Gpbar1-201ENSMUST00000077985 1075 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
RaraP11416 Trank1-201ENSMUST00000078626 10520 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
RaraP11416 Ciart-202ENSMUST00000159739 1939 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
RaraP11416 Zfp568-203ENSMUST00000148442 4005 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
RaraP11416 Pxylp1-203ENSMUST00000119141 2768 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
RaraP11416 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
RaraP11416 Gm12626-201ENSMUST00000117339 1983 ntBASIC15.38■□□□□ 0.05
RaraP11416 Gm12623-201ENSMUST00000119849 1983 ntBASIC15.38■□□□□ 0.05
RaraP11416 Gm42872-201ENSMUST00000200026 1967 ntBASIC15.38■□□□□ 0.05
RaraP11416 Chit1-201ENSMUST00000086475 1688 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
RaraP11416 Erg-206ENSMUST00000122199 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
RaraP11416 Gm5763-201ENSMUST00000155951 1530 ntBASIC15.38■□□□□ 0.05
RaraP11416 Slit1-202ENSMUST00000166496 4556 ntTSL 5 BASIC15.38■□□□□ 0.05
Retrieved 100 of 76,532 protein–RNA pairs in 39 ms