Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Chd3B1AR17 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Chd3B1AR17 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
Chd3B1AR17 Ppp1r3d-201ENSMUST00000058678 3267 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
Chd3B1AR17 Il17re-202ENSMUST00000058548 2940 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Chd3B1AR17 Tcf4-248ENSMUST00000202354 2120 ntTSL 5 BASIC13.94□□□□□ -0.18
Chd3B1AR17 Tcf4-257ENSMUST00000202772 2125 ntTSL 5 BASIC13.94□□□□□ -0.18
Chd3B1AR17 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Chd3B1AR17 Foxl1-201ENSMUST00000181609 2705 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
Chd3B1AR17 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Chd3B1AR17 Fggy-203ENSMUST00000107091 1395 ntTSL 5 BASIC13.94□□□□□ -0.18
Chd3B1AR17 Mul1-203ENSMUST00000105815 473 ntTSL 3 BASIC13.94□□□□□ -0.18
Chd3B1AR17 Sec22b-203ENSMUST00000130620 640 ntTSL 2 BASIC13.94□□□□□ -0.18
Chd3B1AR17 Nupr1-201ENSMUST00000032961 829 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Chd3B1AR17 Cmc2-201ENSMUST00000078589 523 ntTSL 2 BASIC13.94□□□□□ -0.18
Chd3B1AR17 Btbd3-202ENSMUST00000091556 4657 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Chd3B1AR17 Poli-202ENSMUST00000121674 2778 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Chd3B1AR17 Btbd10-201ENSMUST00000047091 2581 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Chd3B1AR17 Mpp4-201ENSMUST00000066374 2344 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
Chd3B1AR17 Mpp4-202ENSMUST00000078874 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Chd3B1AR17 Tcf4-258ENSMUST00000202937 2103 ntTSL 5 BASIC13.93□□□□□ -0.18
Chd3B1AR17 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Chd3B1AR17 Sept1-202ENSMUST00000106314 1486 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Chd3B1AR17 Gnpat-201ENSMUST00000034466 2984 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Chd3B1AR17 Gm29374-201ENSMUST00000187198 1340 ntTSL 3 BASIC13.93□□□□□ -0.18
Chd3B1AR17 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Chd3B1AR17 Trav3d-3-201ENSMUST00000103599 276 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
Chd3B1AR17 Trav3n-3-201ENSMUST00000103625 276 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
Chd3B1AR17 B230359F08Rik-201ENSMUST00000103671 426 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
Chd3B1AR17 Akirin1-ps-201ENSMUST00000119676 458 ntBASIC13.93□□□□□ -0.18
Chd3B1AR17 Trav3-3-202ENSMUST00000183835 276 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
Chd3B1AR17 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC13.93□□□□□ -0.18
Chd3B1AR17 Tmem139-201ENSMUST00000095987 1147 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
Chd3B1AR17 Zic4-209ENSMUST00000173933 1764 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
Chd3B1AR17 Syncrip-209ENSMUST00000174361 1767 ntTSL 5 BASIC13.93□□□□□ -0.18
Chd3B1AR17 Dmpk-201ENSMUST00000032568 2761 ntAPPRIS P3 TSL 5 BASIC13.93□□□□□ -0.18
Chd3B1AR17 Enpp1-203ENSMUST00000135846 2721 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Chd3B1AR17 Ecsit-201ENSMUST00000098937 1673 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Chd3B1AR17 Fam76a-201ENSMUST00000030696 3053 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Chd3B1AR17 Dmrtc2-201ENSMUST00000011493 1619 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Chd3B1AR17 Gnb4-201ENSMUST00000108234 2510 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Chd3B1AR17 Rfx5-207ENSMUST00000137088 4333 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
Chd3B1AR17 Pid1-204ENSMUST00000176559 1564 ntTSL 2 BASIC13.93□□□□□ -0.18
Chd3B1AR17 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Chd3B1AR17 Syt7-204ENSMUST00000223586 1344 ntBASIC13.92□□□□□ -0.18
Chd3B1AR17 Jakmip1-201ENSMUST00000043794 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Chd3B1AR17 Crip3-202ENSMUST00000113465 1035 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Chd3B1AR17 Blvra-201ENSMUST00000002064 1160 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Chd3B1AR17 AC153937.4-201ENSMUST00000218479 661 ntTSL 3 BASIC13.92□□□□□ -0.18
Chd3B1AR17 AC087891.2-201ENSMUST00000219293 658 ntTSL 5 BASIC13.92□□□□□ -0.18
Chd3B1AR17 Mt1-201ENSMUST00000034215 549 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Chd3B1AR17 Alkbh6-201ENSMUST00000060834 982 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Chd3B1AR17 Dido1-202ENSMUST00000087517 8723 ntAPPRIS P4 TSL 1 (best) BASIC13.92□□□□□ -0.18
Chd3B1AR17 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC13.92□□□□□ -0.18
Chd3B1AR17 Slc35f1-201ENSMUST00000105473 4941 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Chd3B1AR17 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
Chd3B1AR17 Neu2-203ENSMUST00000164128 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Chd3B1AR17 Lrp11-203ENSMUST00000130590 3220 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Chd3B1AR17 P4hb-201ENSMUST00000026122 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Chd3B1AR17 C130073E24Rik-201ENSMUST00000210222 6144 ntTSL 5 BASIC13.92□□□□□ -0.18
Chd3B1AR17 Sox5-202ENSMUST00000077160 2526 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Chd3B1AR17 Atp2a2-202ENSMUST00000177974 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Chd3B1AR17 Crybb3-203ENSMUST00000118226 892 ntAPPRIS P1 TSL 3 BASIC13.92□□□□□ -0.18
Chd3B1AR17 Gm5108-201ENSMUST00000177891 543 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Chd3B1AR17 Rnf2-203ENSMUST00000186415 1106 ntTSL 5 BASIC13.92□□□□□ -0.18
Chd3B1AR17 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Chd3B1AR17 Prss38-201ENSMUST00000061481 1243 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Chd3B1AR17 Crybb3-201ENSMUST00000076069 816 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Chd3B1AR17 Emilin3-201ENSMUST00000057169 3547 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
Chd3B1AR17 Pdia4-201ENSMUST00000077290 2399 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Chd3B1AR17 Sgce-202ENSMUST00000090686 1547 ntTSL 5 BASIC13.92□□□□□ -0.18
Chd3B1AR17 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
Chd3B1AR17 Myg1-202ENSMUST00000113682 1480 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Chd3B1AR17 Pld3-201ENSMUST00000117095 2282 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Chd3B1AR17 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Chd3B1AR17 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Chd3B1AR17 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Chd3B1AR17 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Chd3B1AR17 Fmnl2-205ENSMUST00000155586 3939 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Chd3B1AR17 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Chd3B1AR17 Ccdc171-204ENSMUST00000126429 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Chd3B1AR17 Gm29154-231ENSMUST00000215120 1367 ntTSL 5 BASIC13.91□□□□□ -0.18
Chd3B1AR17 Dlgap1-207ENSMUST00000133983 7173 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Chd3B1AR17 Gtf2ird1-208ENSMUST00000167084 3283 ntTSL 5 BASIC13.91□□□□□ -0.18
Chd3B1AR17 Rxra-203ENSMUST00000113934 1989 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Chd3B1AR17 Nudt1-203ENSMUST00000110825 599 ntTSL 2 BASIC13.91□□□□□ -0.18
Chd3B1AR17 Gm15957-201ENSMUST00000118893 974 ntBASIC13.91□□□□□ -0.18
Chd3B1AR17 Gm15393-201ENSMUST00000120499 219 ntBASIC13.91□□□□□ -0.18
Chd3B1AR17 Gm13568-201ENSMUST00000156099 446 ntTSL 5 BASIC13.91□□□□□ -0.18
Chd3B1AR17 Gm45711-202ENSMUST00000164175 979 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
Chd3B1AR17 Gm26515-201ENSMUST00000181141 996 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Chd3B1AR17 Gm15294-202ENSMUST00000182079 366 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
Chd3B1AR17 Midn-202ENSMUST00000099492 3597 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
Chd3B1AR17 Reln-201ENSMUST00000062372 10885 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
Chd3B1AR17 Cd1d1-202ENSMUST00000063869 1421 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Chd3B1AR17 Gm14452-201ENSMUST00000118680 1632 ntBASIC13.91□□□□□ -0.18
Chd3B1AR17 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Chd3B1AR17 Olfr1411-202ENSMUST00000190844 1821 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
Chd3B1AR17 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Chd3B1AR17 Ppp1r18-206ENSMUST00000190496 1395 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 49.2 ms