Protein–RNA interactions for Protein: Q9R1N9

Col13a1, Collagen alpha-1(XIII) chain, mousemouse

Predictions only

Length 751 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col13a1Q9R1N9 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col13a1Q9R1N9 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col13a1Q9R1N9 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col13a1Q9R1N9 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Col13a1Q9R1N9 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
Col13a1Q9R1N9 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col13a1Q9R1N9 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC18.61■□□□□ 0.57
Col13a1Q9R1N9 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC18.61■□□□□ 0.57
Col13a1Q9R1N9 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Col13a1Q9R1N9 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
Col13a1Q9R1N9 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC18.59■□□□□ 0.57
Col13a1Q9R1N9 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC18.59■□□□□ 0.57
Col13a1Q9R1N9 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Col13a1Q9R1N9 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC18.59■□□□□ 0.57
Col13a1Q9R1N9 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Col13a1Q9R1N9 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col13a1Q9R1N9 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Col13a1Q9R1N9 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Col13a1Q9R1N9 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC18.58■□□□□ 0.56
Col13a1Q9R1N9 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC18.58■□□□□ 0.56
Col13a1Q9R1N9 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
Col13a1Q9R1N9 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col13a1Q9R1N9 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col13a1Q9R1N9 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col13a1Q9R1N9 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col13a1Q9R1N9 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
Col13a1Q9R1N9 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col13a1Q9R1N9 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC18.57■□□□□ 0.56
Col13a1Q9R1N9 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col13a1Q9R1N9 Gm37847-201ENSMUST00000192163 1497 ntBASIC18.57■□□□□ 0.56
Col13a1Q9R1N9 Gm31748-201ENSMUST00000194938 1497 ntBASIC18.57■□□□□ 0.56
Col13a1Q9R1N9 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col13a1Q9R1N9 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col13a1Q9R1N9 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col13a1Q9R1N9 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col13a1Q9R1N9 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
Col13a1Q9R1N9 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col13a1Q9R1N9 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
Col13a1Q9R1N9 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col13a1Q9R1N9 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col13a1Q9R1N9 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC18.53■□□□□ 0.56
Col13a1Q9R1N9 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col13a1Q9R1N9 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col13a1Q9R1N9 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Col13a1Q9R1N9 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC18.53■□□□□ 0.56
Col13a1Q9R1N9 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Col13a1Q9R1N9 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC18.53■□□□□ 0.56
Col13a1Q9R1N9 Gm5131-201ENSMUST00000212776 1238 ntBASIC18.53■□□□□ 0.56
Col13a1Q9R1N9 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col13a1Q9R1N9 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col13a1Q9R1N9 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
Col13a1Q9R1N9 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC18.52■□□□□ 0.56
Col13a1Q9R1N9 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Col13a1Q9R1N9 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col13a1Q9R1N9 Gm21956-201ENSMUST00000179946 522 ntBASIC18.52■□□□□ 0.56
Col13a1Q9R1N9 Gm7417-201ENSMUST00000192950 473 ntBASIC18.52■□□□□ 0.56
Col13a1Q9R1N9 Gm9847-201ENSMUST00000052528 599 ntBASIC18.52■□□□□ 0.56
Col13a1Q9R1N9 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col13a1Q9R1N9 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Col13a1Q9R1N9 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
Col13a1Q9R1N9 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
Col13a1Q9R1N9 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col13a1Q9R1N9 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col13a1Q9R1N9 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col13a1Q9R1N9 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col13a1Q9R1N9 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col13a1Q9R1N9 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
Col13a1Q9R1N9 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC18.49■□□□□ 0.55
Col13a1Q9R1N9 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Col13a1Q9R1N9 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Col13a1Q9R1N9 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Col13a1Q9R1N9 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Col13a1Q9R1N9 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Col13a1Q9R1N9 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Col13a1Q9R1N9 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Col13a1Q9R1N9 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Col13a1Q9R1N9 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC18.47■□□□□ 0.55
Col13a1Q9R1N9 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC18.47■□□□□ 0.55
Col13a1Q9R1N9 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Col13a1Q9R1N9 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Col13a1Q9R1N9 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Col13a1Q9R1N9 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Col13a1Q9R1N9 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Col13a1Q9R1N9 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Col13a1Q9R1N9 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC18.46■□□□□ 0.55
Col13a1Q9R1N9 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Col13a1Q9R1N9 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
Col13a1Q9R1N9 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Col13a1Q9R1N9 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC18.46■□□□□ 0.55
Col13a1Q9R1N9 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC18.46■□□□□ 0.55
Col13a1Q9R1N9 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC18.46■□□□□ 0.55
Col13a1Q9R1N9 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC18.46■□□□□ 0.55
Col13a1Q9R1N9 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
Col13a1Q9R1N9 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Col13a1Q9R1N9 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
Col13a1Q9R1N9 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
Col13a1Q9R1N9 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Col13a1Q9R1N9 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Col13a1Q9R1N9 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Col13a1Q9R1N9 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 10.3 ms