Protein–RNA interactions for Protein: Q60649

Clpb, Caseinolytic peptidase B protein homolog, mousemouse

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ClpbQ60649 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
ClpbQ60649 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC20.96■□□□□ 0.95
ClpbQ60649 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
ClpbQ60649 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
ClpbQ60649 Triobp-201ENSMUST00000109687 2570 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.95
ClpbQ60649 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
ClpbQ60649 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
ClpbQ60649 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
ClpbQ60649 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC20.95■□□□□ 0.94
ClpbQ60649 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
ClpbQ60649 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
ClpbQ60649 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC20.95■□□□□ 0.94
ClpbQ60649 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ClpbQ60649 Plpp5-201ENSMUST00000068916 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ClpbQ60649 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
ClpbQ60649 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
ClpbQ60649 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC20.94■□□□□ 0.94
ClpbQ60649 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ClpbQ60649 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ClpbQ60649 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
ClpbQ60649 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ClpbQ60649 Gm6934-201ENSMUST00000194780 1905 ntBASIC20.94■□□□□ 0.94
ClpbQ60649 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ClpbQ60649 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
ClpbQ60649 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
ClpbQ60649 AC164433.2-201ENSMUST00000226346 1701 ntBASIC20.93■□□□□ 0.94
ClpbQ60649 Dyrk1b-202ENSMUST00000172467 2523 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
ClpbQ60649 Dyrk1b-201ENSMUST00000085901 2534 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
ClpbQ60649 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC20.93■□□□□ 0.94
ClpbQ60649 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
ClpbQ60649 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
ClpbQ60649 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC20.93■□□□□ 0.94
ClpbQ60649 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ClpbQ60649 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
ClpbQ60649 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC20.92■□□□□ 0.94
ClpbQ60649 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
ClpbQ60649 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ClpbQ60649 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
ClpbQ60649 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
ClpbQ60649 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
ClpbQ60649 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
ClpbQ60649 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
ClpbQ60649 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC20.91■□□□□ 0.94
ClpbQ60649 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
ClpbQ60649 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
ClpbQ60649 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
ClpbQ60649 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC20.91■□□□□ 0.94
ClpbQ60649 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
ClpbQ60649 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
ClpbQ60649 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
ClpbQ60649 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
ClpbQ60649 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
ClpbQ60649 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
ClpbQ60649 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
ClpbQ60649 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
ClpbQ60649 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
ClpbQ60649 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
ClpbQ60649 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
ClpbQ60649 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
ClpbQ60649 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
ClpbQ60649 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
ClpbQ60649 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
ClpbQ60649 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
ClpbQ60649 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
ClpbQ60649 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
ClpbQ60649 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC20.88■□□□□ 0.93
ClpbQ60649 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
ClpbQ60649 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
ClpbQ60649 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
ClpbQ60649 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ClpbQ60649 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC20.87■□□□□ 0.93
ClpbQ60649 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ClpbQ60649 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
ClpbQ60649 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
ClpbQ60649 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ClpbQ60649 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
ClpbQ60649 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
ClpbQ60649 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
ClpbQ60649 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
ClpbQ60649 Gm10420-201ENSMUST00000121713 882 ntBASIC20.86■□□□□ 0.93
ClpbQ60649 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
ClpbQ60649 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
ClpbQ60649 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
ClpbQ60649 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
ClpbQ60649 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
ClpbQ60649 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC20.86■□□□□ 0.93
ClpbQ60649 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
ClpbQ60649 Gm5067-201ENSMUST00000170449 1009 ntBASIC20.85■□□□□ 0.93
ClpbQ60649 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
ClpbQ60649 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC20.85■□□□□ 0.93
ClpbQ60649 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
ClpbQ60649 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
ClpbQ60649 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
ClpbQ60649 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
ClpbQ60649 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC20.84■□□□□ 0.93
ClpbQ60649 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
ClpbQ60649 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC20.84■□□□□ 0.93
ClpbQ60649 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC20.84■□□□□ 0.93
ClpbQ60649 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
ClpbQ60649 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 38.5 ms