Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Cdx1P18111 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Cdx1P18111 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
Cdx1P18111 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC17.48■□□□□ 0.39
Cdx1P18111 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Cdx1P18111 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Cdx1P18111 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Cdx1P18111 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Cdx1P18111 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
Cdx1P18111 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Cdx1P18111 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Cdx1P18111 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Cdx1P18111 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Cdx1P18111 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC17.47■□□□□ 0.39
Cdx1P18111 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC17.47■□□□□ 0.39
Cdx1P18111 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC17.47■□□□□ 0.39
Cdx1P18111 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC17.47■□□□□ 0.39
Cdx1P18111 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Cdx1P18111 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC17.46■□□□□ 0.39
Cdx1P18111 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
Cdx1P18111 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Cdx1P18111 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Cdx1P18111 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Cdx1P18111 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC17.46■□□□□ 0.39
Cdx1P18111 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
Cdx1P18111 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC17.46■□□□□ 0.39
Cdx1P18111 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Cdx1P18111 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Cdx1P18111 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Cdx1P18111 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Cdx1P18111 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
Cdx1P18111 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
Cdx1P18111 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Cdx1P18111 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Cdx1P18111 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Cdx1P18111 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Cdx1P18111 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Cdx1P18111 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Cdx1P18111 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC17.44■□□□□ 0.38
Cdx1P18111 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Cdx1P18111 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Cdx1P18111 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Cdx1P18111 Gm15043-201ENSMUST00000118843 1543 ntBASIC17.43■□□□□ 0.38
Cdx1P18111 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Cdx1P18111 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Cdx1P18111 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Cdx1P18111 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
Cdx1P18111 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Cdx1P18111 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC17.43■□□□□ 0.38
Cdx1P18111 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Cdx1P18111 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Cdx1P18111 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Cdx1P18111 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC17.42■□□□□ 0.38
Cdx1P18111 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Cdx1P18111 AC131739.1-201ENSMUST00000221692 1245 ntBASIC17.42■□□□□ 0.38
Cdx1P18111 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC17.42■□□□□ 0.38
Cdx1P18111 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC17.42■□□□□ 0.38
Cdx1P18111 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
Cdx1P18111 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cdx1P18111 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cdx1P18111 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cdx1P18111 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cdx1P18111 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Cdx1P18111 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cdx1P18111 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Cdx1P18111 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Cdx1P18111 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
Cdx1P18111 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cdx1P18111 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC17.39■□□□□ 0.37
Cdx1P18111 Mir6538-201ENSMUST00000183713 110 ntBASIC17.39■□□□□ 0.37
Cdx1P18111 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cdx1P18111 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
Cdx1P18111 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cdx1P18111 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Cdx1P18111 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC17.39■□□□□ 0.37
Cdx1P18111 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Cdx1P18111 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Cdx1P18111 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cdx1P18111 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cdx1P18111 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC17.38■□□□□ 0.37
Cdx1P18111 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Cdx1P18111 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cdx1P18111 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC17.38■□□□□ 0.37
Cdx1P18111 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Cdx1P18111 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cdx1P18111 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Cdx1P18111 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
Cdx1P18111 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cdx1P18111 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cdx1P18111 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Cdx1P18111 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC17.37■□□□□ 0.37
Cdx1P18111 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Cdx1P18111 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Cdx1P18111 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Cdx1P18111 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Cdx1P18111 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC17.36■□□□□ 0.37
Cdx1P18111 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Cdx1P18111 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Cdx1P18111 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Cdx1P18111 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 11.7 ms