Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC18.21■□□□□ 0.51
Hmgb3O54879 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Hmgb3O54879 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Hmgb3O54879 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
Hmgb3O54879 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
Hmgb3O54879 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Hmgb3O54879 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Hmgb3O54879 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Hmgb3O54879 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Hmgb3O54879 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC18.2■□□□□ 0.5
Hmgb3O54879 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Hmgb3O54879 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
Hmgb3O54879 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Hmgb3O54879 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Hmgb3O54879 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Hmgb3O54879 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Hmgb3O54879 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Hmgb3O54879 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC18.18■□□□□ 0.5
Hmgb3O54879 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
Hmgb3O54879 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC18.18■□□□□ 0.5
Hmgb3O54879 Dmtn-209ENSMUST00000228295 2572 ntBASIC18.18■□□□□ 0.5
Hmgb3O54879 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC18.18■□□□□ 0.5
Hmgb3O54879 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Hmgb3O54879 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Hmgb3O54879 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Hmgb3O54879 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Hmgb3O54879 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Hmgb3O54879 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Hmgb3O54879 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Hmgb3O54879 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC18.17■□□□□ 0.5
Hmgb3O54879 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
Hmgb3O54879 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Hmgb3O54879 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Hmgb3O54879 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Hmgb3O54879 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Hmgb3O54879 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Hmgb3O54879 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Hmgb3O54879 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Hmgb3O54879 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Hmgb3O54879 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Hmgb3O54879 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Hmgb3O54879 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Hmgb3O54879 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Hmgb3O54879 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Hmgb3O54879 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Hmgb3O54879 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC18.15■□□□□ 0.5
Hmgb3O54879 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Hmgb3O54879 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Hmgb3O54879 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC18.15■□□□□ 0.5
Hmgb3O54879 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
Hmgb3O54879 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Hmgb3O54879 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Hmgb3O54879 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Hmgb3O54879 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Hmgb3O54879 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Hmgb3O54879 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Hmgb3O54879 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Hmgb3O54879 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Hmgb3O54879 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Hmgb3O54879 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC18.13■□□□□ 0.49
Hmgb3O54879 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Hmgb3O54879 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC18.13■□□□□ 0.49
Hmgb3O54879 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Hmgb3O54879 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Hmgb3O54879 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Hmgb3O54879 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Hmgb3O54879 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC18.12■□□□□ 0.49
Hmgb3O54879 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Hmgb3O54879 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Hmgb3O54879 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Hmgb3O54879 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Hmgb3O54879 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Hmgb3O54879 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Hmgb3O54879 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Hmgb3O54879 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Hmgb3O54879 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Hmgb3O54879 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Hmgb3O54879 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
Hmgb3O54879 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
Hmgb3O54879 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
Hmgb3O54879 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Hmgb3O54879 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Hmgb3O54879 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC18.1■□□□□ 0.49
Hmgb3O54879 Gm14121-201ENSMUST00000121441 1380 ntBASIC18.1■□□□□ 0.49
Hmgb3O54879 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC18.1■□□□□ 0.49
Hmgb3O54879 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Hmgb3O54879 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC18.1■□□□□ 0.49
Hmgb3O54879 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Hmgb3O54879 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Hmgb3O54879 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Hmgb3O54879 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC18.09■□□□□ 0.49
Hmgb3O54879 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
Hmgb3O54879 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Hmgb3O54879 Gm6934-201ENSMUST00000194780 1905 ntBASIC18.09■□□□□ 0.49
Hmgb3O54879 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Hmgb3O54879 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Hmgb3O54879 Gm26766-202ENSMUST00000227544 2347 ntBASIC18.08■□□□□ 0.48
Hmgb3O54879 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
Hmgb3O54879 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Hmgb3O54879 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 69.1 ms