Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Prpf40aQ9R1C7 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Prpf40aQ9R1C7 Bbs7-203ENSMUST00000108156 2687 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Prpf40aQ9R1C7 Sh2b1-205ENSMUST00000205733 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Prpf40aQ9R1C7 Tc2n-203ENSMUST00000160830 2005 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Prpf40aQ9R1C7 Mink1-203ENSMUST00000079244 4829 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Prpf40aQ9R1C7 1110008P14Rik-202ENSMUST00000146423 2618 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Prpf40aQ9R1C7 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
Prpf40aQ9R1C7 Pard3-202ENSMUST00000079777 3394 ntTSL 5 BASIC15.73■□□□□ 0.11
Prpf40aQ9R1C7 Acr-201ENSMUST00000023295 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Prpf40aQ9R1C7 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC15.73■□□□□ 0.11
Prpf40aQ9R1C7 Cald1-201ENSMUST00000031775 2142 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
Prpf40aQ9R1C7 Ppp2r5b-201ENSMUST00000025695 2742 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Prpf40aQ9R1C7 Sirpa-202ENSMUST00000099113 3342 ntTSL 3 BASIC15.73■□□□□ 0.11
Prpf40aQ9R1C7 Fam163b-201ENSMUST00000151224 2959 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Prpf40aQ9R1C7 Ppig-201ENSMUST00000040915 6245 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Prpf40aQ9R1C7 Kcnc2-201ENSMUST00000092175 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Prpf40aQ9R1C7 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
Prpf40aQ9R1C7 Smo-201ENSMUST00000001812 3779 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Prpf40aQ9R1C7 Rbfox3-201ENSMUST00000017576 3150 ntAPPRIS P4 TSL 1 (best) BASIC15.72■□□□□ 0.11
Prpf40aQ9R1C7 Apbb1-215ENSMUST00000190369 1882 ntTSL 5 BASIC15.72■□□□□ 0.11
Prpf40aQ9R1C7 Ank1-208ENSMUST00000121075 1740 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Prpf40aQ9R1C7 Saa1-201ENSMUST00000128088 609 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Prpf40aQ9R1C7 9330020H09Rik-201ENSMUST00000163781 2147 ntTSL 2 BASIC15.72■□□□□ 0.11
Prpf40aQ9R1C7 Pxn-213ENSMUST00000202564 2126 ntTSL 5 BASIC15.72■□□□□ 0.11
Prpf40aQ9R1C7 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
Prpf40aQ9R1C7 Hmgb1-202ENSMUST00000093196 1092 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Prpf40aQ9R1C7 Pcdhga12-201ENSMUST00000044851 5080 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Prpf40aQ9R1C7 Kcp-201ENSMUST00000078112 4775 ntTSL 5 BASIC15.72■□□□□ 0.11
Prpf40aQ9R1C7 Gak-201ENSMUST00000046603 4453 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Prpf40aQ9R1C7 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Prpf40aQ9R1C7 Dhx9-202ENSMUST00000186380 4561 ntAPPRIS P2 TSL 2 BASIC15.72■□□□□ 0.11
Prpf40aQ9R1C7 Pprc1-202ENSMUST00000099392 3956 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Prpf40aQ9R1C7 Gm43951-201ENSMUST00000204457 2889 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
Prpf40aQ9R1C7 Mcrs1-202ENSMUST00000163506 1795 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Prpf40aQ9R1C7 Pip5k1c-210ENSMUST00000163075 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Prpf40aQ9R1C7 Tuft1-203ENSMUST00000196655 2156 ntTSL 5 BASIC15.72■□□□□ 0.11
Prpf40aQ9R1C7 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Prpf40aQ9R1C7 Ano7-201ENSMUST00000058682 2963 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Prpf40aQ9R1C7 Acap2-201ENSMUST00000058033 6493 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Prpf40aQ9R1C7 AU040320-202ENSMUST00000102607 4191 ntAPPRIS P4 TSL 1 (best) BASIC15.72■□□□□ 0.11
Prpf40aQ9R1C7 Prrc2a-206ENSMUST00000174805 6741 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Prpf40aQ9R1C7 Cgn-201ENSMUST00000107272 4963 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Prpf40aQ9R1C7 Tmem59l-201ENSMUST00000045286 1491 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Prpf40aQ9R1C7 Pxdn-201ENSMUST00000118321 2698 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Prpf40aQ9R1C7 Cpne1-203ENSMUST00000109608 3492 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Prpf40aQ9R1C7 Tmem38a-201ENSMUST00000034244 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Prpf40aQ9R1C7 Tex44-201ENSMUST00000046004 1724 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
Prpf40aQ9R1C7 Ager-209ENSMUST00000174496 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Prpf40aQ9R1C7 Gm6018-201ENSMUST00000216090 1306 ntBASIC15.71■□□□□ 0.11
Prpf40aQ9R1C7 Trim27-201ENSMUST00000021761 4204 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Prpf40aQ9R1C7 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Prpf40aQ9R1C7 Gpr157-201ENSMUST00000094451 4900 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Prpf40aQ9R1C7 2810408A11Rik-202ENSMUST00000100969 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Prpf40aQ9R1C7 Phldb1-214ENSMUST00000147495 5424 ntAPPRIS P5 TSL 5 BASIC15.71■□□□□ 0.11
Prpf40aQ9R1C7 Dpp7-201ENSMUST00000028332 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Prpf40aQ9R1C7 Rtn4-205ENSMUST00000102843 4618 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Prpf40aQ9R1C7 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Prpf40aQ9R1C7 Igf2-203ENSMUST00000105935 650 ntAPPRIS P1 TSL 3 BASIC15.71■□□□□ 0.11
Prpf40aQ9R1C7 Gm13496-201ENSMUST00000141133 1165 ntTSL 2 BASIC15.71■□□□□ 0.11
Prpf40aQ9R1C7 Gm26308-201ENSMUST00000157768 69 ntBASIC15.71■□□□□ 0.11
Prpf40aQ9R1C7 Hoga1-204ENSMUST00000172244 631 ntTSL 5 BASIC15.71■□□□□ 0.11
Prpf40aQ9R1C7 Rhox2a-202ENSMUST00000173650 735 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Prpf40aQ9R1C7 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC15.71■□□□□ 0.11
Prpf40aQ9R1C7 Rhox2c-204ENSMUST00000184688 720 ntTSL 5 BASIC15.71■□□□□ 0.11
Prpf40aQ9R1C7 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Prpf40aQ9R1C7 Pelp1-201ENSMUST00000019065 3435 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Prpf40aQ9R1C7 Fubp1-206ENSMUST00000196739 2526 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Prpf40aQ9R1C7 Tcf12-202ENSMUST00000183404 6299 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
Prpf40aQ9R1C7 Sesn1-201ENSMUST00000041438 2600 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
Prpf40aQ9R1C7 BC026585-201ENSMUST00000046743 1618 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Prpf40aQ9R1C7 Zbtb33-201ENSMUST00000049740 5122 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Prpf40aQ9R1C7 Nrap-201ENSMUST00000040711 5334 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.1
Prpf40aQ9R1C7 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Prpf40aQ9R1C7 Eif4g3-215ENSMUST00000203828 5289 ntTSL 5 BASIC15.71■□□□□ 0.1
Prpf40aQ9R1C7 Kirrel-203ENSMUST00000159976 7236 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.1
Prpf40aQ9R1C7 Taf3-201ENSMUST00000026888 4792 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Prpf40aQ9R1C7 Abi3-201ENSMUST00000059026 4006 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Prpf40aQ9R1C7 Capn7-201ENSMUST00000022451 3648 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Prpf40aQ9R1C7 Cdt1-201ENSMUST00000006760 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Prpf40aQ9R1C7 Fbxo21-206ENSMUST00000202447 3959 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
Prpf40aQ9R1C7 Hnrnpr-204ENSMUST00000131671 2543 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Prpf40aQ9R1C7 Gm21983-201ENSMUST00000154724 1690 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
Prpf40aQ9R1C7 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Prpf40aQ9R1C7 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Prpf40aQ9R1C7 Gm17619-201ENSMUST00000180625 1449 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Prpf40aQ9R1C7 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Prpf40aQ9R1C7 Ints3-203ENSMUST00000196530 3778 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Prpf40aQ9R1C7 Dzip1-202ENSMUST00000047208 4476 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
Prpf40aQ9R1C7 Hells-201ENSMUST00000025965 5868 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Prpf40aQ9R1C7 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Prpf40aQ9R1C7 Rasal3-204ENSMUST00000135618 3293 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Prpf40aQ9R1C7 Cep170b-204ENSMUST00000220627 5395 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Prpf40aQ9R1C7 Pja1-205ENSMUST00000167246 2666 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
Prpf40aQ9R1C7 Cul5-209ENSMUST00000166367 5942 ntTSL 5 BASIC15.7■□□□□ 0.1
Prpf40aQ9R1C7 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Prpf40aQ9R1C7 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC15.7■□□□□ 0.1
Prpf40aQ9R1C7 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Prpf40aQ9R1C7 2810408I11Rik-202ENSMUST00000150749 711 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Prpf40aQ9R1C7 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC15.7■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 43.9 ms