Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 2410002F23Rik-214ENSMUST00000186606 748 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
Ushbp1Q8R370 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC16.02■□□□□ 0.16
Ushbp1Q8R370 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Ushbp1Q8R370 Gm34866-201ENSMUST00000196146 515 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Ushbp1Q8R370 Lce1d-201ENSMUST00000029524 678 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Ushbp1Q8R370 Pltp-201ENSMUST00000059954 1809 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Ushbp1Q8R370 Krit1-211ENSMUST00000200386 2343 ntTSL 5 BASIC16.02■□□□□ 0.15
Ushbp1Q8R370 Tfap2c-201ENSMUST00000030391 2838 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Ushbp1Q8R370 Pcdha1-201ENSMUST00000070797 5248 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.15
Ushbp1Q8R370 Cpeb2-205ENSMUST00000169035 7050 ntAPPRIS P2 TSL 5 BASIC16.02■□□□□ 0.15
Ushbp1Q8R370 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Ushbp1Q8R370 Itgav-202ENSMUST00000111740 6788 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
Ushbp1Q8R370 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Ushbp1Q8R370 Ppp1r15b-201ENSMUST00000052529 5594 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ushbp1Q8R370 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ushbp1Q8R370 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
Ushbp1Q8R370 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
Ushbp1Q8R370 Prss44-201ENSMUST00000098345 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ushbp1Q8R370 H1fnt-201ENSMUST00000060855 1326 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
Ushbp1Q8R370 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
Ushbp1Q8R370 Sema5b-202ENSMUST00000120756 4646 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ushbp1Q8R370 Cpne1-202ENSMUST00000109607 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ushbp1Q8R370 Mtmr7-202ENSMUST00000048898 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ushbp1Q8R370 Stra8-202ENSMUST00000114997 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ushbp1Q8R370 Gm15693-201ENSMUST00000120470 637 ntBASIC16.01■□□□□ 0.15
Ushbp1Q8R370 Gm11543-201ENSMUST00000120758 370 ntBASIC16.01■□□□□ 0.15
Ushbp1Q8R370 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC16.01■□□□□ 0.15
Ushbp1Q8R370 Cend1-204ENSMUST00000164387 1206 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ushbp1Q8R370 Gm10275-202ENSMUST00000168697 495 ntBASIC16.01■□□□□ 0.15
Ushbp1Q8R370 Mir99ahg-211ENSMUST00000183099 1189 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Ushbp1Q8R370 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ushbp1Q8R370 5830408C22Rik-201ENSMUST00000210072 1115 ntTSL 5 BASIC16.01■□□□□ 0.15
Ushbp1Q8R370 Tex12-202ENSMUST00000217236 1003 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ushbp1Q8R370 Wdyhv1-203ENSMUST00000226889 394 ntBASIC16.01■□□□□ 0.15
Ushbp1Q8R370 Lce1g-201ENSMUST00000029527 925 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ushbp1Q8R370 Rps27l-201ENSMUST00000040917 499 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ushbp1Q8R370 Hes5-201ENSMUST00000049621 1273 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ushbp1Q8R370 Myoz3-201ENSMUST00000056533 870 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ushbp1Q8R370 Tmem116-202ENSMUST00000060004 1297 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ushbp1Q8R370 Gm10275-201ENSMUST00000092620 635 ntBASIC16.01■□□□□ 0.15
Ushbp1Q8R370 Fbxo8-202ENSMUST00000110322 1709 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Ushbp1Q8R370 Bid-201ENSMUST00000004560 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ushbp1Q8R370 Adamts7-201ENSMUST00000113059 5379 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
Ushbp1Q8R370 Scarf1-202ENSMUST00000118243 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ushbp1Q8R370 Kif1c-203ENSMUST00000102554 6684 ntAPPRIS P2 TSL 5 BASIC16.01■□□□□ 0.15
Ushbp1Q8R370 Galnt2-201ENSMUST00000034458 4113 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ushbp1Q8R370 Pak1-205ENSMUST00000206984 2794 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
Ushbp1Q8R370 Rbbp8nl-201ENSMUST00000038529 2319 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ushbp1Q8R370 Appl1-201ENSMUST00000036570 7642 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ushbp1Q8R370 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ushbp1Q8R370 Zfp606-201ENSMUST00000098822 4748 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ushbp1Q8R370 2810408A11Rik-202ENSMUST00000100969 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ushbp1Q8R370 Mtif2-202ENSMUST00000093239 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ushbp1Q8R370 Srp72-202ENSMUST00000120550 2297 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
Ushbp1Q8R370 Map2k7-211ENSMUST00000145165 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ushbp1Q8R370 Pls1-201ENSMUST00000093800 3704 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Ushbp1Q8R370 Mesd-201ENSMUST00000094215 4492 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Ushbp1Q8R370 Gm21451-201ENSMUST00000111062 2775 ntBASIC16■□□□□ 0.15
Ushbp1Q8R370 Ankrd24-201ENSMUST00000119336 3561 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
Ushbp1Q8R370 Tmem269-202ENSMUST00000212054 1504 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
Ushbp1Q8R370 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Ushbp1Q8R370 Stra8-203ENSMUST00000114999 1455 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
Ushbp1Q8R370 Gm13517-201ENSMUST00000120782 1495 ntBASIC16■□□□□ 0.15
Ushbp1Q8R370 Sept1-201ENSMUST00000106313 1285 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
Ushbp1Q8R370 Ppdpf-202ENSMUST00000108841 689 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Ushbp1Q8R370 AC155937.1-202ENSMUST00000156229 621 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
Ushbp1Q8R370 Ppt2-202ENSMUST00000166040 1139 ntAPPRIS P1 TSL 3 BASIC16■□□□□ 0.15
Ushbp1Q8R370 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC16■□□□□ 0.15
Ushbp1Q8R370 Saa2-203ENSMUST00000210769 652 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Ushbp1Q8R370 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC16■□□□□ 0.15
Ushbp1Q8R370 Ifng-201ENSMUST00000068592 1208 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Ushbp1Q8R370 Saa2-201ENSMUST00000075982 606 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Ushbp1Q8R370 Arhgef40-204ENSMUST00000182061 4756 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Ushbp1Q8R370 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Ushbp1Q8R370 Hnrnpa2b1-204ENSMUST00000203220 1638 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
Ushbp1Q8R370 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC16■□□□□ 0.15
Ushbp1Q8R370 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC16■□□□□ 0.15
Ushbp1Q8R370 Casc4-204ENSMUST00000110586 4032 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Ushbp1Q8R370 Stx5a-201ENSMUST00000010254 1780 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
Ushbp1Q8R370 Kctd14-201ENSMUST00000050732 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Ushbp1Q8R370 D130052B06Rik-201ENSMUST00000101371 2295 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Ushbp1Q8R370 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Ushbp1Q8R370 Camsap1-202ENSMUST00000114167 7981 ntAPPRIS P2 TSL 5 BASIC15.99■□□□□ 0.15
Ushbp1Q8R370 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC15.99■□□□□ 0.15
Ushbp1Q8R370 Gm8410-201ENSMUST00000117225 605 ntBASIC15.99■□□□□ 0.15
Ushbp1Q8R370 Rpl9-202ENSMUST00000118543 1193 ntTSL 2 BASIC15.99■□□□□ 0.15
Ushbp1Q8R370 Gm16137-201ENSMUST00000161571 664 ntTSL 5 BASIC15.99■□□□□ 0.15
Ushbp1Q8R370 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Ushbp1Q8R370 1700028E10Rik-205ENSMUST00000202024 924 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Ushbp1Q8R370 Lyzl6-201ENSMUST00000021328 900 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Ushbp1Q8R370 Ndufs6-203ENSMUST00000222930 512 ntTSL 3 BASIC15.99■□□□□ 0.15
Ushbp1Q8R370 Olfr324-201ENSMUST00000054683 1122 ntAPPRIS P2 BASIC15.99■□□□□ 0.15
Ushbp1Q8R370 Cav3-201ENSMUST00000075477 1157 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Ushbp1Q8R370 Med8-203ENSMUST00000084319 1134 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Ushbp1Q8R370 Slc41a1-201ENSMUST00000086559 4697 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Ushbp1Q8R370 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
Ushbp1Q8R370 2900055J20Rik-201ENSMUST00000096572 723 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
Ushbp1Q8R370 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Ushbp1Q8R370 Lpgat1-201ENSMUST00000110855 7233 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Ushbp1Q8R370 Pcdha11-202ENSMUST00000115657 5360 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 28.8 ms