Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Ccdc28bQ8CEG5 Slco3a1-203ENSMUST00000107453 3793 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Ccdc28bQ8CEG5 Mfsd4a-205ENSMUST00000144548 3288 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Ccdc28bQ8CEG5 Nipa2-204ENSMUST00000119201 3925 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ccdc28bQ8CEG5 Gsdme-201ENSMUST00000031845 2502 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ccdc28bQ8CEG5 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ccdc28bQ8CEG5 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
Ccdc28bQ8CEG5 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC14.12□□□□□ -0.15
Ccdc28bQ8CEG5 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ccdc28bQ8CEG5 Mfn2-202ENSMUST00000105714 2427 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Ccdc28bQ8CEG5 Bach2-201ENSMUST00000037416 3462 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Ccdc28bQ8CEG5 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ccdc28bQ8CEG5 Arl5b-202ENSMUST00000069870 6981 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ccdc28bQ8CEG5 Arhgef17-201ENSMUST00000107032 10190 ntAPPRIS P2 TSL 5 BASIC14.12□□□□□ -0.15
Ccdc28bQ8CEG5 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Ccdc28bQ8CEG5 Mroh1-202ENSMUST00000096385 5268 ntAPPRIS P4 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ccdc28bQ8CEG5 2310007B03Rik-202ENSMUST00000143419 2074 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ccdc28bQ8CEG5 Cacna1g-207ENSMUST00000107789 8383 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Ccdc28bQ8CEG5 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Ccdc28bQ8CEG5 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC14.12□□□□□ -0.15
Ccdc28bQ8CEG5 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ccdc28bQ8CEG5 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC14.12□□□□□ -0.15
Ccdc28bQ8CEG5 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ccdc28bQ8CEG5 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Ccdc28bQ8CEG5 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ccdc28bQ8CEG5 Nol10-201ENSMUST00000046011 3021 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ccdc28bQ8CEG5 Klhl18-203ENSMUST00000198164 4538 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Ccdc28bQ8CEG5 Fgfr1-202ENSMUST00000117179 4046 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ccdc28bQ8CEG5 Slc29a1-209ENSMUST00000166119 1598 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Ccdc28bQ8CEG5 Srgn-204ENSMUST00000160987 1727 ntAPPRIS P1 TSL 3 BASIC14.12□□□□□ -0.15
Ccdc28bQ8CEG5 Uhrf1bp1l-201ENSMUST00000020112 6448 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ccdc28bQ8CEG5 Pik3cd-214ENSMUST00000177654 4765 ntAPPRIS P4 TSL 5 BASIC14.12□□□□□ -0.15
Ccdc28bQ8CEG5 Sipa1-202ENSMUST00000080824 3837 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ccdc28bQ8CEG5 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ccdc28bQ8CEG5 Mknk1-201ENSMUST00000019677 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ccdc28bQ8CEG5 Gm39377-201ENSMUST00000214587 2533 ntTSL 5 BASIC14.11□□□□□ -0.15
Ccdc28bQ8CEG5 Best4-ps-201ENSMUST00000129783 1380 ntBASIC14.11□□□□□ -0.15
Ccdc28bQ8CEG5 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Ccdc28bQ8CEG5 F2-202ENSMUST00000111335 1969 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Ccdc28bQ8CEG5 Gimap3-202ENSMUST00000204036 2145 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ccdc28bQ8CEG5 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
Ccdc28bQ8CEG5 Galnt17-201ENSMUST00000086023 8040 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ccdc28bQ8CEG5 Itga8-201ENSMUST00000028106 5812 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ccdc28bQ8CEG5 Traf2-201ENSMUST00000028311 3044 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ccdc28bQ8CEG5 Dgki-202ENSMUST00000090314 3784 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Ccdc28bQ8CEG5 Nyap1-201ENSMUST00000061789 3912 ntAPPRIS P3 TSL 5 BASIC14.11□□□□□ -0.15
Ccdc28bQ8CEG5 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC14.11□□□□□ -0.15
Ccdc28bQ8CEG5 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Ccdc28bQ8CEG5 Gnb2-212ENSMUST00000150063 1569 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ccdc28bQ8CEG5 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Ccdc28bQ8CEG5 Chrnd-202ENSMUST00000186373 2949 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Ccdc28bQ8CEG5 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC14.11□□□□□ -0.15
Ccdc28bQ8CEG5 Olfr286-202ENSMUST00000205305 969 ntBASIC14.11□□□□□ -0.15
Ccdc28bQ8CEG5 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Ccdc28bQ8CEG5 Gm7002-201ENSMUST00000221386 2165 ntBASIC14.11□□□□□ -0.15
Ccdc28bQ8CEG5 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ccdc28bQ8CEG5 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC14.11□□□□□ -0.15
Ccdc28bQ8CEG5 Cdpf1-201ENSMUST00000071876 997 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ccdc28bQ8CEG5 Cacna1g-203ENSMUST00000103166 8104 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Ccdc28bQ8CEG5 Nfxl1-202ENSMUST00000087216 3712 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Ccdc28bQ8CEG5 Ptger3-201ENSMUST00000041175 3148 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ccdc28bQ8CEG5 Asphd2-201ENSMUST00000031291 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ccdc28bQ8CEG5 Arf2-201ENSMUST00000057921 2242 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ccdc28bQ8CEG5 Cenpl-203ENSMUST00000111620 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ccdc28bQ8CEG5 Slc8b1-203ENSMUST00000111889 1624 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Ccdc28bQ8CEG5 Chac1-201ENSMUST00000028780 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ccdc28bQ8CEG5 Col2a1-202ENSMUST00000088355 4862 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ccdc28bQ8CEG5 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ccdc28bQ8CEG5 Kifc3-202ENSMUST00000169353 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ccdc28bQ8CEG5 Tacc3-202ENSMUST00000079534 2899 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ccdc28bQ8CEG5 Synj1-203ENSMUST00000121759 7090 ntAPPRIS P4 TSL 5 BASIC14.11□□□□□ -0.15
Ccdc28bQ8CEG5 Tmem86b-202ENSMUST00000205360 1344 ntTSL 2 BASIC14.11□□□□□ -0.15
Ccdc28bQ8CEG5 AC119177.1-201ENSMUST00000227647 1332 ntBASIC14.11□□□□□ -0.15
Ccdc28bQ8CEG5 Pprc1-202ENSMUST00000099392 3956 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Ccdc28bQ8CEG5 Ankrd34b-203ENSMUST00000168871 3397 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ccdc28bQ8CEG5 Sox17-206ENSMUST00000192650 3242 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Ccdc28bQ8CEG5 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC14.1□□□□□ -0.15
Ccdc28bQ8CEG5 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ccdc28bQ8CEG5 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ccdc28bQ8CEG5 Kcna5-201ENSMUST00000060972 2862 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
Ccdc28bQ8CEG5 Enpp1-203ENSMUST00000135846 2721 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ccdc28bQ8CEG5 Ldlrap1-201ENSMUST00000037828 6549 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ccdc28bQ8CEG5 Mib1-205ENSMUST00000165555 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ccdc28bQ8CEG5 Arhgap10-201ENSMUST00000076316 3084 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ccdc28bQ8CEG5 Pcdh7-203ENSMUST00000191837 8785 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ccdc28bQ8CEG5 Fbxw9-201ENSMUST00000095220 1907 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ccdc28bQ8CEG5 Pde1c-209ENSMUST00000203372 3147 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Ccdc28bQ8CEG5 AC025913.2-201ENSMUST00000220136 1766 ntBASIC14.1□□□□□ -0.15
Ccdc28bQ8CEG5 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ccdc28bQ8CEG5 Gm7222-201ENSMUST00000117512 906 ntBASIC14.1□□□□□ -0.15
Ccdc28bQ8CEG5 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ccdc28bQ8CEG5 Tcf4-248ENSMUST00000202354 2120 ntTSL 5 BASIC14.1□□□□□ -0.15
Ccdc28bQ8CEG5 Tcf4-257ENSMUST00000202772 2125 ntTSL 5 BASIC14.1□□□□□ -0.15
Ccdc28bQ8CEG5 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ccdc28bQ8CEG5 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Ccdc28bQ8CEG5 Grk6-205ENSMUST00000224653 2976 ntBASIC14.1□□□□□ -0.15
Ccdc28bQ8CEG5 Aurkaip1-201ENSMUST00000084097 1159 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ccdc28bQ8CEG5 Hlcs-202ENSMUST00000163193 5371 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ccdc28bQ8CEG5 Nop9-201ENSMUST00000019441 3694 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ccdc28bQ8CEG5 Sirt3-210ENSMUST00000211179 1606 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 32.9 ms