Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Mapk7-202ENSMUST00000101085 3254 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
Trim56Q80VI1 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Trim56Q80VI1 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Trim56Q80VI1 Lats1-202ENSMUST00000165952 7209 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Trim56Q80VI1 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
Trim56Q80VI1 Uqcrq-203ENSMUST00000109021 405 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim56Q80VI1 Apoo-203ENSMUST00000113897 1218 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Trim56Q80VI1 Ginm1-204ENSMUST00000124838 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim56Q80VI1 Tm7sf2-209ENSMUST00000161528 732 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Trim56Q80VI1 Rasl12-202ENSMUST00000165682 1903 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Trim56Q80VI1 Ptp4a2-207ENSMUST00000165853 3382 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
Trim56Q80VI1 Gtf2ird1-208ENSMUST00000167084 3283 ntTSL 5 BASIC16.83■□□□□ 0.28
Trim56Q80VI1 A930015D03Rik-201ENSMUST00000173900 1111 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Trim56Q80VI1 Mir8102-201ENSMUST00000184148 139 ntBASIC16.83■□□□□ 0.28
Trim56Q80VI1 Bet1l-209ENSMUST00000211624 769 ntTSL 3 BASIC16.83■□□□□ 0.28
Trim56Q80VI1 Adk-207ENSMUST00000224069 1818 ntAPPRIS ALT1 BASIC16.83■□□□□ 0.28
Trim56Q80VI1 Col9a2-201ENSMUST00000030372 2924 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim56Q80VI1 Ufsp1-201ENSMUST00000052825 1037 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
Trim56Q80VI1 Il17re-202ENSMUST00000058548 2940 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim56Q80VI1 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim56Q80VI1 Arhgef18-201ENSMUST00000004684 5271 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim56Q80VI1 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim56Q80VI1 Acot3-201ENSMUST00000021653 3431 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
Trim56Q80VI1 Ociad2-205ENSMUST00000201908 2378 ntTSL 2 BASIC16.82■□□□□ 0.28
Trim56Q80VI1 Etfdh-201ENSMUST00000029386 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim56Q80VI1 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim56Q80VI1 9130008F23Rik-201ENSMUST00000068258 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim56Q80VI1 Chst4-202ENSMUST00000211894 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim56Q80VI1 Olfr1411-202ENSMUST00000190844 1821 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
Trim56Q80VI1 Tmem211-201ENSMUST00000086615 1827 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim56Q80VI1 Xpo1-202ENSMUST00000102869 6004 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim56Q80VI1 Fam163b-201ENSMUST00000151224 2959 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim56Q80VI1 Sept1-202ENSMUST00000106314 1486 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim56Q80VI1 Dhrs1-201ENSMUST00000002403 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim56Q80VI1 Rasa4-201ENSMUST00000042135 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim56Q80VI1 Olfr317-202ENSMUST00000215513 2769 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
Trim56Q80VI1 Arhgap44-201ENSMUST00000047463 4074 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim56Q80VI1 Gbgt1-203ENSMUST00000163121 1335 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
Trim56Q80VI1 Gm7820-201ENSMUST00000121012 1052 ntBASIC16.82■□□□□ 0.28
Trim56Q80VI1 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC16.82■□□□□ 0.28
Trim56Q80VI1 3110053B16Rik-204ENSMUST00000145605 575 ntBASIC16.82■□□□□ 0.28
Trim56Q80VI1 1700042O10Rik-201ENSMUST00000151032 1075 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Trim56Q80VI1 Mir7684-201ENSMUST00000183858 60 ntBASIC16.82■□□□□ 0.28
Trim56Q80VI1 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC16.82■□□□□ 0.28
Trim56Q80VI1 Ighv1-25-201ENSMUST00000195638 345 ntBASIC16.82■□□□□ 0.28
Trim56Q80VI1 Calml4-201ENSMUST00000034777 864 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim56Q80VI1 Hes2-201ENSMUST00000030782 2521 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim56Q80VI1 Fam83g-202ENSMUST00000093019 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim56Q80VI1 Cmpk1-201ENSMUST00000030491 3170 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim56Q80VI1 Fgfr2-207ENSMUST00000117872 4223 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim56Q80VI1 Dusp15-203ENSMUST00000123121 2993 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
Trim56Q80VI1 Egfem1-201ENSMUST00000118531 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Trim56Q80VI1 Msi1-208ENSMUST00000150779 3133 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim56Q80VI1 Hp1bp3-202ENSMUST00000097836 3113 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim56Q80VI1 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
Trim56Q80VI1 Hmgb3-201ENSMUST00000015361 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim56Q80VI1 Smg9-201ENSMUST00000002280 2242 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim56Q80VI1 Ankrd24-201ENSMUST00000119336 3561 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
Trim56Q80VI1 Prn-201ENSMUST00000124100 2132 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
Trim56Q80VI1 Gm6263-201ENSMUST00000120029 1342 ntBASIC16.81■□□□□ 0.28
Trim56Q80VI1 4930412M03Rik-201ENSMUST00000130746 1111 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Trim56Q80VI1 Gm3436-201ENSMUST00000179930 840 ntBASIC16.81■□□□□ 0.28
Trim56Q80VI1 2010015M23Rik-201ENSMUST00000181900 1199 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Trim56Q80VI1 Rnf2-203ENSMUST00000186415 1106 ntTSL 5 BASIC16.81■□□□□ 0.28
Trim56Q80VI1 Gm33320-201ENSMUST00000192232 530 ntBASIC16.81■□□□□ 0.28
Trim56Q80VI1 Wdyhv1-203ENSMUST00000226889 394 ntBASIC16.81■□□□□ 0.28
Trim56Q80VI1 Cela1-201ENSMUST00000023775 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim56Q80VI1 Mesp1-201ENSMUST00000032760 1275 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim56Q80VI1 Tbx3-202ENSMUST00000079719 4982 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim56Q80VI1 Sema3b-204ENSMUST00000102531 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim56Q80VI1 Nedd4l-202ENSMUST00000163516 8163 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
Trim56Q80VI1 Tmtc2-201ENSMUST00000061506 5629 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim56Q80VI1 Slc2a6-201ENSMUST00000045702 2138 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trim56Q80VI1 Anxa4-201ENSMUST00000001187 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim56Q80VI1 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Trim56Q80VI1 Gm38102-201ENSMUST00000192791 1935 ntBASIC16.8■□□□□ 0.28
Trim56Q80VI1 Hsp90b1-201ENSMUST00000020238 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim56Q80VI1 Pls1-201ENSMUST00000093800 3704 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim56Q80VI1 Pias3-203ENSMUST00000107077 2695 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Trim56Q80VI1 Nfatc4-204ENSMUST00000226357 2680 ntAPPRIS ALT2 BASIC16.8■□□□□ 0.28
Trim56Q80VI1 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim56Q80VI1 Cpne1-202ENSMUST00000109607 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim56Q80VI1 Gm15460-201ENSMUST00000118147 391 ntBASIC16.8■□□□□ 0.28
Trim56Q80VI1 Gm14719-201ENSMUST00000121891 340 ntBASIC16.8■□□□□ 0.28
Trim56Q80VI1 Vps53-204ENSMUST00000129256 650 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Trim56Q80VI1 Gm11773-201ENSMUST00000138256 497 ntTSL 2 BASIC16.8■□□□□ 0.28
Trim56Q80VI1 Gm37267-201ENSMUST00000194222 681 ntTSL 2 BASIC16.8■□□□□ 0.28
Trim56Q80VI1 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim56Q80VI1 Zpbp-201ENSMUST00000020413 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim56Q80VI1 Las1l-201ENSMUST00000079987 2530 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim56Q80VI1 Stat3-201ENSMUST00000092671 2927 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim56Q80VI1 Hacd4-201ENSMUST00000030221 2089 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim56Q80VI1 Mpl-201ENSMUST00000006556 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim56Q80VI1 Mettl7a3-201ENSMUST00000075420 1618 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim56Q80VI1 Gpt2-201ENSMUST00000034136 3639 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim56Q80VI1 Ldha-202ENSMUST00000048209 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim56Q80VI1 Mtif2-202ENSMUST00000093239 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim56Q80VI1 Dnajc7-201ENSMUST00000014339 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim56Q80VI1 Taf7l-201ENSMUST00000009740 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trim56Q80VI1 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 46.6 ms